Choanephora cucurbitarum

Taxonomy: cellular organisms; Eukaryota; Opisthokonta; Fungi; Fungi incertae sedis; Mucoromycota; Mucoromycotina; Mucoromycetes; Mucorales; Mucorineae; Choanephoraceae; Choanephoroideae; Choanephora

Average proteome isoelectric point is 6.59

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 11924 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1C7LQE7|A0A1C7LQE7_9FUNG Uncharacterized protein (Fragment) OS=Choanephora cucurbitarum OX=101091 GN=A0J61_11950 PE=4 SV=1
MM1 pKa = 8.25DD2 pKa = 4.39SLFYY6 pKa = 11.24LLFIDD11 pKa = 4.31EE12 pKa = 5.72FIVSSGITLQSIASSLALQANIPGEE37 pKa = 4.85DD38 pKa = 3.57IANMSDD44 pKa = 2.59WSLPTTFEE52 pKa = 3.44NCYY55 pKa = 10.38QRR57 pKa = 11.84DD58 pKa = 3.67HH59 pKa = 6.77LSCFKK64 pKa = 10.36FANILITPSFKK75 pKa = 9.79IDD77 pKa = 3.21IDD79 pKa = 3.52IHH81 pKa = 7.93LDD83 pKa = 3.67DD84 pKa = 4.15YY85 pKa = 11.18TDD87 pKa = 3.71VYY89 pKa = 10.89FKK91 pKa = 11.21SLDD94 pKa = 3.35

Molecular weight: 10.72 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1C7NMY3|A0A1C7NMY3_9FUNG Papain inhibitor OS=Choanephora cucurbitarum OX=101091 GN=pi_0 PE=4 SV=1
MM1 pKa = 7.61GNNLSSTNRR10 pKa = 11.84SSKK13 pKa = 9.77QRR15 pKa = 11.84NTRR18 pKa = 11.84KK19 pKa = 10.03VKK21 pKa = 10.25ASNRR25 pKa = 11.84AKK27 pKa = 9.65TPKK30 pKa = 9.83KK31 pKa = 10.14RR32 pKa = 11.84FSLTPQKK39 pKa = 10.65QVGTAPSTSNGLRR52 pKa = 11.84RR53 pKa = 11.84LSLGSSKK60 pKa = 10.49KK61 pKa = 10.27GKK63 pKa = 9.95QPAKK67 pKa = 10.04SNKK70 pKa = 9.52FGLSMNNKK78 pKa = 7.81RR79 pKa = 11.84DD80 pKa = 3.46RR81 pKa = 11.84RR82 pKa = 11.84RR83 pKa = 11.84SSVASNGSFGKK94 pKa = 9.87LKK96 pKa = 11.31AMMTPSGTATKK107 pKa = 9.86KK108 pKa = 9.35QKK110 pKa = 9.62KK111 pKa = 7.92SKK113 pKa = 9.86RR114 pKa = 11.84RR115 pKa = 11.84SSTADD120 pKa = 2.81RR121 pKa = 11.84VMDD124 pKa = 3.96KK125 pKa = 11.08LNPNVNTAQTSKK137 pKa = 11.05AKK139 pKa = 10.22RR140 pKa = 11.84NSVSNPFKK148 pKa = 10.68KK149 pKa = 10.32QPTKK153 pKa = 10.77QRR155 pKa = 11.84GFMSKK160 pKa = 9.34VAAA163 pKa = 4.33

Molecular weight: 17.87 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

11924

0

11924

4748132

9

5983

398.2

45.06

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.565 ± 0.021

1.402 ± 0.009

5.686 ± 0.015

6.557 ± 0.025

4.026 ± 0.015

4.774 ± 0.023

2.719 ± 0.011

5.909 ± 0.016

6.336 ± 0.024

9.364 ± 0.023

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.461 ± 0.01

4.681 ± 0.015

4.835 ± 0.02

4.948 ± 0.018

5.036 ± 0.017

8.295 ± 0.029

6.026 ± 0.016

5.862 ± 0.019

1.138 ± 0.007

3.359 ± 0.012
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski