Acer yangbiense

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Sapindaceae; Hippocastanoideae; Acereae; Acer

Average proteome isoelectric point is 6.62

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28112 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C7I7V0|A0A5C7I7V0_9ROSI Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_006928 PE=4 SV=1
MM1 pKa = 7.47YY2 pKa = 7.74EE3 pKa = 4.11TNHH6 pKa = 7.35LEE8 pKa = 4.13EE9 pKa = 5.15NPPSAYY15 pKa = 10.46GQMDD19 pKa = 4.04SCPGNVCPDD28 pKa = 3.55FDD30 pKa = 4.72GNQVFHH36 pKa = 7.44SPIPEE41 pKa = 4.48CGASFPNLEE50 pKa = 4.22YY51 pKa = 10.78SSPLPEE57 pKa = 3.75MPIWRR62 pKa = 11.84TVEE65 pKa = 5.15DD66 pKa = 4.22IPSPSIPVDD75 pKa = 3.61DD76 pKa = 4.07SHH78 pKa = 9.03RR79 pKa = 11.84EE80 pKa = 3.93EE81 pKa = 5.25DD82 pKa = 4.13LHH84 pKa = 7.62TGDD87 pKa = 5.88AFALTDD93 pKa = 5.02DD94 pKa = 4.94GDD96 pKa = 4.36AKK98 pKa = 10.58DD99 pKa = 3.73TTGGAEE105 pKa = 4.42GYY107 pKa = 9.82LAEE110 pKa = 5.29LSNSLLNFNEE120 pKa = 4.29EE121 pKa = 4.1EE122 pKa = 5.08LMTLDD127 pKa = 4.59DD128 pKa = 4.4VEE130 pKa = 5.98KK131 pKa = 11.14EE132 pKa = 4.19MIDD135 pKa = 3.23KK136 pKa = 11.22SFFDD140 pKa = 4.58GLNLLLNSPNDD151 pKa = 3.45VNQDD155 pKa = 3.39HH156 pKa = 6.51MPSPEE161 pKa = 4.35PEE163 pKa = 3.99TSVTPDD169 pKa = 3.42YY170 pKa = 10.84LANAYY175 pKa = 8.81GSCPVEE181 pKa = 4.23SVEE184 pKa = 4.07NVHH187 pKa = 5.79MQSSASASDD196 pKa = 3.44PQFPEE201 pKa = 5.32LIDD204 pKa = 3.64GVIYY208 pKa = 8.88CTLNMEE214 pKa = 5.53DD215 pKa = 5.25PDD217 pKa = 4.3IPCNDD222 pKa = 3.84DD223 pKa = 3.55VFFPNKK229 pKa = 9.7LQPLSVSAVAQRR241 pKa = 11.84EE242 pKa = 4.47AGNSTCSSVKK252 pKa = 10.49DD253 pKa = 3.33LSGNKK258 pKa = 9.46NLTDD262 pKa = 4.14GGPVLLQRR270 pKa = 11.84EE271 pKa = 4.48QEE273 pKa = 4.26NPAQSQVSSQMMGSQVIPEE292 pKa = 4.3KK293 pKa = 10.97VQFHH297 pKa = 5.7PVKK300 pKa = 10.63FGLPNCDD307 pKa = 3.58SPHH310 pKa = 5.79LASRR314 pKa = 11.84KK315 pKa = 9.39PGIACGGSNLTNSMSICTDD334 pKa = 2.47SHH336 pKa = 6.14QPARR340 pKa = 11.84LKK342 pKa = 10.81EE343 pKa = 4.06EE344 pKa = 4.05NKK346 pKa = 9.82EE347 pKa = 3.74YY348 pKa = 10.49CYY350 pKa = 10.83KK351 pKa = 10.8RR352 pKa = 11.84NANGVKK358 pKa = 9.59QEE360 pKa = 4.44CDD362 pKa = 3.47DD363 pKa = 4.2PATIQDD369 pKa = 4.15CQTLNAEE376 pKa = 4.55FGSTNIPDD384 pKa = 4.65LEE386 pKa = 5.25PDD388 pKa = 3.14INDD391 pKa = 4.94PISEE395 pKa = 4.23PEE397 pKa = 4.0EE398 pKa = 3.85PSIEE402 pKa = 4.18SDD404 pKa = 3.88DD405 pKa = 3.99DD406 pKa = 3.61VPYY409 pKa = 11.11YY410 pKa = 11.05SDD412 pKa = 3.72IEE414 pKa = 4.52AMILDD419 pKa = 4.49MDD421 pKa = 5.92LDD423 pKa = 4.92PDD425 pKa = 3.87DD426 pKa = 4.11QDD428 pKa = 3.6IYY430 pKa = 9.78EE431 pKa = 4.36QEE433 pKa = 3.93VSKK436 pKa = 10.78YY437 pKa = 6.6QHH439 pKa = 6.45EE440 pKa = 4.16DD441 pKa = 2.92TRR443 pKa = 11.84RR444 pKa = 11.84GNHH447 pKa = 4.9QAA449 pKa = 3.52

Molecular weight: 49.41 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C7GZY6|A0A5C7GZY6_9ROSI Uncharacterized protein OS=Acer yangbiense OX=1000413 GN=EZV62_022882 PE=4 SV=1
MM1 pKa = 7.71PFIKK5 pKa = 9.49FTKK8 pKa = 9.7NPSSSSINSTLLISFPLLHH27 pKa = 6.53SRR29 pKa = 11.84RR30 pKa = 11.84PSHH33 pKa = 6.7LLLRR37 pKa = 11.84STHH40 pKa = 5.05GRR42 pKa = 11.84RR43 pKa = 11.84PSHH46 pKa = 6.9RR47 pKa = 11.84IKK49 pKa = 10.33IRR51 pKa = 11.84NRR53 pKa = 11.84GVV55 pKa = 2.72

Molecular weight: 6.35 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

28112

0

28112

12256278

51

5462

436.0

48.8

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.287 ± 0.014

1.948 ± 0.007

5.362 ± 0.009

6.438 ± 0.016

4.355 ± 0.01

6.374 ± 0.015

2.365 ± 0.006

5.584 ± 0.011

6.294 ± 0.013

9.815 ± 0.018

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.502 ± 0.006

4.737 ± 0.01

4.637 ± 0.015

3.633 ± 0.011

5.052 ± 0.011

8.886 ± 0.015

4.93 ± 0.009

6.636 ± 0.009

1.325 ± 0.005

2.841 ± 0.007
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski