Ctenophore-associated circular genome 1

Taxonomy: Viruses; Satellites; DNA satellites; Single stranded DNA satellites

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A141MJB3|A0A141MJB3_9VIRU ATP-dependent helicase Rep OS=Ctenophore-associated circular genome 1 OX=1778570 PE=3 SV=1
MM1 pKa = 7.84PKK3 pKa = 10.5LSDD6 pKa = 3.51NRR8 pKa = 11.84VVNYY12 pKa = 9.86VFTWNNYY19 pKa = 7.47TDD21 pKa = 3.82DD22 pKa = 3.67VKK24 pKa = 11.58AFIGNFANDD33 pKa = 3.29YY34 pKa = 9.95CKK36 pKa = 9.84WLVYY40 pKa = 10.54GEE42 pKa = 4.34EE43 pKa = 4.37VGASGTPHH51 pKa = 6.46LQGCFSLYY59 pKa = 9.92DD60 pKa = 3.67KK61 pKa = 11.2KK62 pKa = 10.99RR63 pKa = 11.84ITQLCKK69 pKa = 10.58LGFKK73 pKa = 10.45AHH75 pKa = 7.0LEE77 pKa = 3.99PMKK80 pKa = 10.66GSPKK84 pKa = 9.96QAIAYY89 pKa = 7.12CKK91 pKa = 9.95KK92 pKa = 10.41DD93 pKa = 3.27GSFTEE98 pKa = 4.64LGDD101 pKa = 3.47VTRR104 pKa = 11.84GQGEE108 pKa = 4.23RR109 pKa = 11.84NDD111 pKa = 3.73LKK113 pKa = 10.84RR114 pKa = 11.84ACEE117 pKa = 4.11LIKK120 pKa = 10.36EE121 pKa = 4.5GKK123 pKa = 9.75SISEE127 pKa = 4.25VADD130 pKa = 3.65ACPTTYY136 pKa = 10.67VKK138 pKa = 10.68YY139 pKa = 10.69SRR141 pKa = 11.84GLRR144 pKa = 11.84EE145 pKa = 3.85LALVASEE152 pKa = 4.61AYY154 pKa = 8.84EE155 pKa = 4.17HH156 pKa = 6.56EE157 pKa = 4.61SVRR160 pKa = 11.84GVWIYY165 pKa = 10.95GQTGVGKK172 pKa = 9.75SHH174 pKa = 7.96LARR177 pKa = 11.84DD178 pKa = 4.24VYY180 pKa = 11.26PNLFDD185 pKa = 4.77KK186 pKa = 11.08SQSKK190 pKa = 7.92WWDD193 pKa = 4.15GYY195 pKa = 10.7CNEE198 pKa = 4.43HH199 pKa = 6.15TVLIDD204 pKa = 6.14DD205 pKa = 5.98LDD207 pKa = 4.16TDD209 pKa = 4.6CLGHH213 pKa = 5.94YY214 pKa = 9.58LKK216 pKa = 10.65RR217 pKa = 11.84WADD220 pKa = 3.39KK221 pKa = 10.05YY222 pKa = 11.24ACTGEE227 pKa = 4.49TKK229 pKa = 10.72GGTIKK234 pKa = 10.46LQHH237 pKa = 6.25RR238 pKa = 11.84VFVVTSNYY246 pKa = 10.07LPWEE250 pKa = 3.94LHH252 pKa = 6.33KK253 pKa = 11.15DD254 pKa = 3.5DD255 pKa = 5.79LMAEE259 pKa = 4.68AISRR263 pKa = 11.84RR264 pKa = 11.84FTIYY268 pKa = 10.36HH269 pKa = 6.51KK270 pKa = 7.8EE271 pKa = 4.01TRR273 pKa = 11.84DD274 pKa = 3.47QKK276 pKa = 11.63LEE278 pKa = 4.1DD279 pKa = 4.42CEE281 pKa = 4.32VLTYY285 pKa = 10.93ADD287 pKa = 3.6RR288 pKa = 11.84HH289 pKa = 5.75NIII292 pKa = 4.56

Molecular weight: 33.44 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A141MJB3|A0A141MJB3_9VIRU ATP-dependent helicase Rep OS=Ctenophore-associated circular genome 1 OX=1778570 PE=3 SV=1
MM1 pKa = 7.84PKK3 pKa = 10.5LSDD6 pKa = 3.51NRR8 pKa = 11.84VVNYY12 pKa = 9.86VFTWNNYY19 pKa = 7.47TDD21 pKa = 3.82DD22 pKa = 3.67VKK24 pKa = 11.58AFIGNFANDD33 pKa = 3.29YY34 pKa = 9.95CKK36 pKa = 9.84WLVYY40 pKa = 10.54GEE42 pKa = 4.34EE43 pKa = 4.37VGASGTPHH51 pKa = 6.46LQGCFSLYY59 pKa = 9.92DD60 pKa = 3.67KK61 pKa = 11.2KK62 pKa = 10.99RR63 pKa = 11.84ITQLCKK69 pKa = 10.58LGFKK73 pKa = 10.45AHH75 pKa = 7.0LEE77 pKa = 3.99PMKK80 pKa = 10.66GSPKK84 pKa = 9.96QAIAYY89 pKa = 7.12CKK91 pKa = 9.95KK92 pKa = 10.41DD93 pKa = 3.27GSFTEE98 pKa = 4.64LGDD101 pKa = 3.47VTRR104 pKa = 11.84GQGEE108 pKa = 4.23RR109 pKa = 11.84NDD111 pKa = 3.73LKK113 pKa = 10.84RR114 pKa = 11.84ACEE117 pKa = 4.11LIKK120 pKa = 10.36EE121 pKa = 4.5GKK123 pKa = 9.75SISEE127 pKa = 4.25VADD130 pKa = 3.65ACPTTYY136 pKa = 10.67VKK138 pKa = 10.68YY139 pKa = 10.69SRR141 pKa = 11.84GLRR144 pKa = 11.84EE145 pKa = 3.85LALVASEE152 pKa = 4.61AYY154 pKa = 8.84EE155 pKa = 4.17HH156 pKa = 6.56EE157 pKa = 4.61SVRR160 pKa = 11.84GVWIYY165 pKa = 10.95GQTGVGKK172 pKa = 9.75SHH174 pKa = 7.96LARR177 pKa = 11.84DD178 pKa = 4.24VYY180 pKa = 11.26PNLFDD185 pKa = 4.77KK186 pKa = 11.08SQSKK190 pKa = 7.92WWDD193 pKa = 4.15GYY195 pKa = 10.7CNEE198 pKa = 4.43HH199 pKa = 6.15TVLIDD204 pKa = 6.14DD205 pKa = 5.98LDD207 pKa = 4.16TDD209 pKa = 4.6CLGHH213 pKa = 5.94YY214 pKa = 9.58LKK216 pKa = 10.65RR217 pKa = 11.84WADD220 pKa = 3.39KK221 pKa = 10.05YY222 pKa = 11.24ACTGEE227 pKa = 4.49TKK229 pKa = 10.72GGTIKK234 pKa = 10.46LQHH237 pKa = 6.25RR238 pKa = 11.84VFVVTSNYY246 pKa = 10.07LPWEE250 pKa = 3.94LHH252 pKa = 6.33KK253 pKa = 11.15DD254 pKa = 3.5DD255 pKa = 5.79LMAEE259 pKa = 4.68AISRR263 pKa = 11.84RR264 pKa = 11.84FTIYY268 pKa = 10.36HH269 pKa = 6.51KK270 pKa = 7.8EE271 pKa = 4.01TRR273 pKa = 11.84DD274 pKa = 3.47QKK276 pKa = 11.63LEE278 pKa = 4.1DD279 pKa = 4.42CEE281 pKa = 4.32VLTYY285 pKa = 10.93ADD287 pKa = 3.6RR288 pKa = 11.84HH289 pKa = 5.75NIII292 pKa = 4.56

Molecular weight: 33.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1

0

1

292

292

292

292.0

33.44

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.164 ± 0.0

3.425 ± 0.0

7.534 ± 0.0

6.507 ± 0.0

3.082 ± 0.0

7.534 ± 0.0

3.425 ± 0.0

4.11 ± 0.0

8.562 ± 0.0

8.562 ± 0.0

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.027 ± 0.0

3.767 ± 0.0

2.397 ± 0.0

2.74 ± 0.0

5.137 ± 0.0

5.137 ± 0.0

6.164 ± 0.0

6.507 ± 0.0

2.397 ± 0.0

5.822 ± 0.0
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski