Wenzhou pacific spadenose shark paramyxovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Paramyxoviridae; Scoliodonvirus; Scoliodon scoliodonvirus

Average proteome isoelectric point is 6.74

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2P1GMX6|A0A2P1GMX6_9MONO Putative glycoprotein OS=Wenzhou pacific spadenose shark paramyxovirus OX=2116452 PE=4 SV=1
MM1 pKa = 7.75ALTFKK6 pKa = 10.56GIKK9 pKa = 9.41SGRR12 pKa = 11.84SGLGKK17 pKa = 10.11SGKK20 pKa = 10.32LSMDD24 pKa = 3.61EE25 pKa = 4.26LCEE28 pKa = 4.16LSCSPFVSSAANPAFGGEE46 pKa = 4.27GSRR49 pKa = 11.84VALISDD55 pKa = 4.1EE56 pKa = 4.46SVAAAPLFIYY66 pKa = 10.38PDD68 pKa = 3.97DD69 pKa = 4.31KK70 pKa = 11.57PEE72 pKa = 4.07EE73 pKa = 4.0FWVDD77 pKa = 3.0LFRR80 pKa = 11.84IFGATFGGGTLNEE93 pKa = 4.41VARR96 pKa = 11.84EE97 pKa = 3.92AALAAVLLSPFKK109 pKa = 11.1NGIDD113 pKa = 3.6LAKK116 pKa = 10.26EE117 pKa = 3.81VAKK120 pKa = 11.04NSGASPEE127 pKa = 4.1IVLLDD132 pKa = 3.86LSPTGRR138 pKa = 11.84IITRR142 pKa = 11.84DD143 pKa = 3.67PASKK147 pKa = 9.64HH148 pKa = 5.89APMLGDD154 pKa = 6.11LIDD157 pKa = 3.87QGDD160 pKa = 4.04ANLQSRR166 pKa = 11.84LFMAKK171 pKa = 9.34SWDD174 pKa = 3.7LDD176 pKa = 3.51QEE178 pKa = 4.31IPEE181 pKa = 4.1EE182 pKa = 4.58AEE184 pKa = 4.06LIRR187 pKa = 11.84AIFCQIYY194 pKa = 9.48GFSGKK199 pKa = 10.46AMANYY204 pKa = 9.68VEE206 pKa = 5.3AYY208 pKa = 10.47ASAKK212 pKa = 9.73LHH214 pKa = 5.98NKK216 pKa = 8.63VFYY219 pKa = 9.72TNRR222 pKa = 11.84FITNSLVITAHH233 pKa = 6.63GATQIVDD240 pKa = 4.14IIRR243 pKa = 11.84ASGQIRR249 pKa = 11.84HH250 pKa = 6.21LLVAEE255 pKa = 4.55ILASGASTGGGGAIGEE271 pKa = 4.81IIRR274 pKa = 11.84HH275 pKa = 5.16HH276 pKa = 6.35AVYY279 pKa = 10.32IAGTQMFQYY288 pKa = 10.37YY289 pKa = 7.59VTVQNVMKK297 pKa = 10.36SRR299 pKa = 11.84RR300 pKa = 11.84ALASISGAVGEE311 pKa = 4.42ARR313 pKa = 11.84TLIKK317 pKa = 10.61LMRR320 pKa = 11.84LQARR324 pKa = 11.84YY325 pKa = 8.87GALGPFVKK333 pKa = 10.4FLCLPDD339 pKa = 4.4HH340 pKa = 6.23NQFSGNAYY348 pKa = 9.23PSLFSMALGIEE359 pKa = 4.19DD360 pKa = 3.81VKK362 pKa = 11.43GKK364 pKa = 8.84TSHH367 pKa = 6.9KK368 pKa = 8.37YY369 pKa = 8.52VHH371 pKa = 7.3DD372 pKa = 3.45ISYY375 pKa = 10.78VNKK378 pKa = 10.26SLYY381 pKa = 10.33EE382 pKa = 3.85LGKK385 pKa = 10.36EE386 pKa = 3.56IGRR389 pKa = 11.84ASFLEE394 pKa = 4.01MDD396 pKa = 3.66QSALNEE402 pKa = 4.16LEE404 pKa = 4.29VTAEE408 pKa = 3.76EE409 pKa = 4.39AANMDD414 pKa = 3.96RR415 pKa = 11.84VNRR418 pKa = 11.84AALKK422 pKa = 10.85ALMDD426 pKa = 5.23DD427 pKa = 5.69DD428 pKa = 5.2YY429 pKa = 11.97DD430 pKa = 5.87SDD432 pKa = 3.91DD433 pKa = 4.18QEE435 pKa = 4.08II436 pKa = 3.74

Molecular weight: 47.17 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2P1GMY3|A0A2P1GMY3_9MONO Hemagglutinin-neuraminidase OS=Wenzhou pacific spadenose shark paramyxovirus OX=2116452 PE=4 SV=1
MM1 pKa = 7.24TSVSGSKK8 pKa = 9.97PLWRR12 pKa = 11.84RR13 pKa = 11.84FLSSALRR20 pKa = 11.84SLRR23 pKa = 11.84TRR25 pKa = 11.84SFRR28 pKa = 11.84YY29 pKa = 8.01RR30 pKa = 11.84TLSQTSQSSDD40 pKa = 3.14PRR42 pKa = 11.84HH43 pKa = 6.46LPTPPHH49 pKa = 6.89PSPTSSPEE57 pKa = 3.61TSTEE61 pKa = 4.07SIYY64 pKa = 11.23CVMNPLSAPLPCEE77 pKa = 3.38TWTEE81 pKa = 3.43QDD83 pKa = 3.15TYY85 pKa = 8.65KK86 pKa = 10.67TSWIQPQCQGRR97 pKa = 11.84GRR99 pKa = 11.84KK100 pKa = 8.6FSKK103 pKa = 9.21GTPVTYY109 pKa = 10.86IMTDD113 pKa = 2.74KK114 pKa = 10.95GLEE117 pKa = 3.86EE118 pKa = 4.18ARR120 pKa = 11.84TYY122 pKa = 10.27TLL124 pKa = 3.85

Molecular weight: 14.08 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10

0

10

6480

124

2164

648.0

72.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.648 ± 0.556

1.59 ± 0.23

5.247 ± 0.448

5.88 ± 0.67

3.565 ± 0.377

5.741 ± 0.295

2.361 ± 0.163

7.33 ± 0.587

5.556 ± 0.989

10.309 ± 0.602

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.392 ± 0.167

3.704 ± 0.153

5.664 ± 0.631

4.028 ± 0.273

5.37 ± 0.446

8.812 ± 0.503

6.404 ± 0.394

5.802 ± 0.431

1.019 ± 0.169

3.58 ± 0.222
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski