Golden Marseillevirus

Taxonomy: Viruses; Varidnaviria; Bamfordvirae; Nucleocytoviricota; Megaviricetes; Pimascovirales; Marseilleviridae; Marseillevirus; unclassified Marseillevirus

Average proteome isoelectric point is 7.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 296 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1D6Y702|A0A1D6Y702_9VIRU Putative nucleoside deaminase OS=Golden Marseillevirus OX=1720526 GN=GMAR_ORF22 PE=4 SV=1
MM1 pKa = 7.08FAVFVEE7 pKa = 4.76TCEE10 pKa = 4.54SSVEE14 pKa = 4.16TSDD17 pKa = 3.5CRR19 pKa = 11.84ATIFEE24 pKa = 4.52VFPDD28 pKa = 3.77TSVCRR33 pKa = 11.84VPILAVFAEE42 pKa = 4.76TVVSRR47 pKa = 11.84PEE49 pKa = 3.56TAVFKK54 pKa = 11.24EE55 pKa = 3.76EE56 pKa = 3.78MLAVFVEE63 pKa = 4.69TCPCKK68 pKa = 10.81LEE70 pKa = 3.88MLEE73 pKa = 4.16VFEE76 pKa = 4.42VTAVCNAEE84 pKa = 4.1MSPEE88 pKa = 4.02NPDD91 pKa = 3.06ICDD94 pKa = 3.81DD95 pKa = 3.86RR96 pKa = 11.84SEE98 pKa = 4.31TSPEE102 pKa = 3.79RR103 pKa = 11.84VVMSDD108 pKa = 3.46VFCATCDD115 pKa = 3.46EE116 pKa = 4.52RR117 pKa = 11.84DD118 pKa = 3.45ATEE121 pKa = 5.62PEE123 pKa = 4.53TAWTT127 pKa = 3.81

Molecular weight: 14.14 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1D6Y740|A0A1D6Y740_9VIRU Uncharacterized protein OS=Golden Marseillevirus OX=1720526 GN=GMAR_ORF71 PE=4 SV=1
MM1 pKa = 7.52FLRR4 pKa = 11.84SSSNFCEE11 pKa = 4.29CRR13 pKa = 11.84SISIQLCPNSLNVNKK28 pKa = 9.44TLLRR32 pKa = 11.84NGFHH36 pKa = 7.56IFTCRR41 pKa = 11.84DD42 pKa = 3.12KK43 pKa = 11.03IFRR46 pKa = 11.84TFPFALAKK54 pKa = 9.65QRR56 pKa = 11.84HH57 pKa = 5.8KK58 pKa = 10.31IWRR61 pKa = 11.84GQTKK65 pKa = 10.11YY66 pKa = 9.97YY67 pKa = 9.78AHH69 pKa = 7.31NIFKK73 pKa = 10.51HH74 pKa = 5.74KK75 pKa = 10.33KK76 pKa = 6.27QLKK79 pKa = 7.51NGRR82 pKa = 11.84WTEE85 pKa = 4.12TQQ87 pKa = 2.96

Molecular weight: 10.48 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

296

0

296

73257

51

1292

247.5

28.36

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.206 ± 0.116

2.633 ± 0.111

4.752 ± 0.093

7.707 ± 0.19

5.75 ± 0.11

5.767 ± 0.126

1.876 ± 0.066

4.856 ± 0.082

8.66 ± 0.216

8.967 ± 0.147

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.125 ± 0.065

3.915 ± 0.101

4.012 ± 0.098

3.843 ± 0.122

5.784 ± 0.126

7.728 ± 0.192

5.253 ± 0.177

6.428 ± 0.108

1.522 ± 0.055

3.217 ± 0.088
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski