Carpinus fangiana

Taxonomy: cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliopsida; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Betulaceae; Carpinus

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 28539 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5N6RI55|A0A5N6RI55_9ROSI Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_017081 PE=3 SV=1
MM1 pKa = 7.81DD2 pKa = 4.07VSSCLLFEE10 pKa = 6.08DD11 pKa = 4.49IADD14 pKa = 4.14SEE16 pKa = 4.37TDD18 pKa = 3.41AAGPDD23 pKa = 3.9HH24 pKa = 7.32KK25 pKa = 10.85IHH27 pKa = 7.66ADD29 pKa = 3.53DD30 pKa = 4.93DD31 pKa = 4.03QDD33 pKa = 5.63AEE35 pKa = 4.52SCSCDD40 pKa = 3.84DD41 pKa = 4.72ACDD44 pKa = 3.79DD45 pKa = 3.57HH46 pKa = 6.73HH47 pKa = 7.21TPGFDD52 pKa = 3.12EE53 pKa = 6.39ALDD56 pKa = 4.17CDD58 pKa = 4.36EE59 pKa = 5.26KK60 pKa = 11.58DD61 pKa = 3.39SGASNGGDD69 pKa = 3.22AGDD72 pKa = 4.73DD73 pKa = 3.28HH74 pKa = 6.82HH75 pKa = 7.58QCGRR79 pKa = 11.84PCASCCLSSDD89 pKa = 3.41HH90 pKa = 6.93AALGSLSSEE99 pKa = 3.88EE100 pKa = 4.48GEE102 pKa = 4.54GEE104 pKa = 4.07EE105 pKa = 4.17EE106 pKa = 4.42TNMGEE111 pKa = 4.31INKK114 pKa = 9.82DD115 pKa = 3.4DD116 pKa = 4.1PSKK119 pKa = 10.91KK120 pKa = 10.16KK121 pKa = 10.44EE122 pKa = 3.84INKK125 pKa = 10.43DD126 pKa = 3.38EE127 pKa = 4.33MEE129 pKa = 5.97DD130 pKa = 3.54GLFWEE135 pKa = 4.6TCMAVGYY142 pKa = 8.94PP143 pKa = 3.59

Molecular weight: 15.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5N6QZ34|A0A5N6QZ34_9ROSI Uncharacterized protein OS=Carpinus fangiana OX=176857 GN=FH972_007833 PE=4 SV=1
MM1 pKa = 7.47PRR3 pKa = 11.84HH4 pKa = 6.18RR5 pKa = 11.84PPLLQRR11 pKa = 11.84RR12 pKa = 11.84PQPRR16 pKa = 11.84SLLSSQSLSSSLLSLTHH33 pKa = 5.97SLSRR37 pKa = 11.84SSAVALSPARR47 pKa = 11.84QPPLSLPLASRR58 pKa = 11.84SSLFHH63 pKa = 6.56SPAAALSPARR73 pKa = 4.24

Molecular weight: 7.82 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

27308

1231

28539

12421239

50

6047

435.2

48.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.619 ± 0.016

1.749 ± 0.007

5.343 ± 0.01

6.315 ± 0.015

3.996 ± 0.009

6.827 ± 0.013

2.458 ± 0.006

4.998 ± 0.01

5.591 ± 0.012

9.55 ± 0.016

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.339 ± 0.006

4.043 ± 0.009

5.331 ± 0.017

3.758 ± 0.01

5.723 ± 0.013

8.792 ± 0.016

5.08 ± 0.009

6.484 ± 0.011

1.336 ± 0.005

2.669 ± 0.006
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski