Paeniglutamicibacter gangotriensis Lz1y

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Micrococcaceae; Paeniglutamicibacter; Paeniglutamicibacter gangotriensis

Average proteome isoelectric point is 6.24

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4017 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M7NA47|M7NA47_9MICC Putative hydrolase OS=Paeniglutamicibacter gangotriensis Lz1y OX=1276920 GN=ADIAG_02089 PE=4 SV=1
MM1 pKa = 7.3SKK3 pKa = 10.28VLASLRR9 pKa = 11.84YY10 pKa = 8.44SAEE13 pKa = 4.12HH14 pKa = 6.11EE15 pKa = 4.33WVDD18 pKa = 3.21ASTPTKK24 pKa = 10.81VGITQVAADD33 pKa = 3.75ALGDD37 pKa = 3.73VVYY40 pKa = 11.27VDD42 pKa = 4.35LPEE45 pKa = 5.01VGDD48 pKa = 4.91AITAGEE54 pKa = 4.25TCGEE58 pKa = 4.21VEE60 pKa = 4.36STKK63 pKa = 10.75SVSDD67 pKa = 3.74LYY69 pKa = 11.56APVTGTILEE78 pKa = 4.33INQEE82 pKa = 4.5AIDD85 pKa = 4.24NPAILNEE92 pKa = 4.18DD93 pKa = 3.85PYY95 pKa = 11.17GAGWLFTVEE104 pKa = 4.07VTAEE108 pKa = 4.3GPLLSAADD116 pKa = 3.76YY117 pKa = 11.24ASANGGDD124 pKa = 3.8VAA126 pKa = 5.53

Molecular weight: 13.03 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M7NL12|M7NL12_9MICC Phosphatidate cytidylyltransferase OS=Paeniglutamicibacter gangotriensis Lz1y OX=1276920 GN=ADIAG_01223 PE=3 SV=1
MM1 pKa = 7.05VPVAAAHH8 pKa = 5.35VRR10 pKa = 11.84AVPARR15 pKa = 11.84VARR18 pKa = 11.84VLRR21 pKa = 11.84QVPVVPVPQQAPAVPARR38 pKa = 11.84QPVQADD44 pKa = 3.54PVRR47 pKa = 11.84AHH49 pKa = 7.61RR50 pKa = 11.84VRR52 pKa = 11.84QVLRR56 pKa = 11.84VQARR60 pKa = 11.84VPRR63 pKa = 11.84VALAQLPAA71 pKa = 5.23

Molecular weight: 7.65 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4017

0

4017

1241062

29

2104

309.0

33.19

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.636 ± 0.05

0.659 ± 0.01

5.365 ± 0.032

5.891 ± 0.034

3.263 ± 0.023

8.772 ± 0.035

2.224 ± 0.017

4.838 ± 0.028

2.997 ± 0.029

10.416 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.307 ± 0.018

2.614 ± 0.021

5.215 ± 0.029

3.055 ± 0.019

6.26 ± 0.039

6.105 ± 0.027

6.061 ± 0.024

7.863 ± 0.03

1.418 ± 0.014

2.04 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski