Ateles paniscus polyomavirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Sepolyvirales; Polyomaviridae; Alphapolyomavirus

Average proteome isoelectric point is 5.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K7QK07|K7QK07_9POLY Small T antigen OS=Ateles paniscus polyomavirus 1 OX=1236391 PE=4 SV=1
MM1 pKa = 7.46GGVLSLFFDD10 pKa = 3.5IAEE13 pKa = 4.41LASALSTEE21 pKa = 4.34TGISVGAILAGEE33 pKa = 4.09AAADD37 pKa = 3.55IEE39 pKa = 4.31ASVMGLMTIEE49 pKa = 4.18GLGAADD55 pKa = 4.18ALAAMGLTMEE65 pKa = 5.06NFSMMYY71 pKa = 9.88ALPGMLSEE79 pKa = 4.54AVGIGTLFQTISGASSLVAVGIKK102 pKa = 9.75YY103 pKa = 10.44SRR105 pKa = 11.84EE106 pKa = 3.62EE107 pKa = 3.66VSIVNKK113 pKa = 10.31NISDD117 pKa = 3.67MALQLWRR124 pKa = 11.84PQDD127 pKa = 3.56YY128 pKa = 11.22YY129 pKa = 11.46DD130 pKa = 3.73ILFPGVNHH138 pKa = 6.51FAHH141 pKa = 6.32YY142 pKa = 10.85LNVIEE147 pKa = 5.31GWASSLVHH155 pKa = 5.38TVSRR159 pKa = 11.84AIWDD163 pKa = 3.77SIMRR167 pKa = 11.84DD168 pKa = 3.06ARR170 pKa = 11.84HH171 pKa = 5.53QIGYY175 pKa = 10.39ASRR178 pKa = 11.84EE179 pKa = 3.96LVVRR183 pKa = 11.84GTTSFQDD190 pKa = 3.21VMAKK194 pKa = 10.3VIEE197 pKa = 4.04TSRR200 pKa = 11.84WVLTSGPSHH209 pKa = 7.14IYY211 pKa = 10.29SSLSEE216 pKa = 4.43YY217 pKa = 10.35YY218 pKa = 10.14RR219 pKa = 11.84QLPGLNPAQIRR230 pKa = 11.84DD231 pKa = 3.44VYY233 pKa = 10.69RR234 pKa = 11.84RR235 pKa = 11.84LGEE238 pKa = 4.11PVPSRR243 pKa = 11.84YY244 pKa = 8.92QLEE247 pKa = 4.18VEE249 pKa = 4.17ARR251 pKa = 11.84EE252 pKa = 4.02EE253 pKa = 3.98SAEE256 pKa = 4.14VIEE259 pKa = 5.07TYY261 pKa = 10.25SAPGGAHH268 pKa = 6.07QRR270 pKa = 11.84VCPDD274 pKa = 2.37WMLPLILGLYY284 pKa = 10.41GDD286 pKa = 4.05VTPTFATYY294 pKa = 9.37IHH296 pKa = 5.77QVEE299 pKa = 4.4KK300 pKa = 10.72EE301 pKa = 3.99DD302 pKa = 4.53DD303 pKa = 3.21KK304 pKa = 11.77GRR306 pKa = 11.84PSKK309 pKa = 10.45RR310 pKa = 11.84RR311 pKa = 11.84RR312 pKa = 11.84LL313 pKa = 3.55

Molecular weight: 34.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K7QLH4|K7QLH4_9POLY Capsid protein VP1 OS=Ateles paniscus polyomavirus 1 OX=1236391 PE=3 SV=1
MM1 pKa = 7.71ASKK4 pKa = 10.36KK5 pKa = 10.09CPRR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 8.22TPSCPRR16 pKa = 11.84KK17 pKa = 9.06PATCPQTTCPVPRR30 pKa = 11.84AVPRR34 pKa = 11.84LLIKK38 pKa = 10.88GGVEE42 pKa = 3.73VLAVKK47 pKa = 9.34TGPDD51 pKa = 3.81SITQIEE57 pKa = 4.95AYY59 pKa = 10.36LNPRR63 pKa = 11.84MGKK66 pKa = 10.07AGNDD70 pKa = 3.43DD71 pKa = 3.54QYY73 pKa = 11.53GYY75 pKa = 10.19SASITVAASLDD86 pKa = 3.31ADD88 pKa = 3.73NPKK91 pKa = 10.27KK92 pKa = 10.73EE93 pKa = 4.17EE94 pKa = 4.07LPTYY98 pKa = 8.96STAKK102 pKa = 10.17ISLPLLNEE110 pKa = 4.58DD111 pKa = 4.2LTCGTLLMWEE121 pKa = 4.14AVSVKK126 pKa = 9.88TEE128 pKa = 3.84VVGISSLVNVHH139 pKa = 6.17IPSKK143 pKa = 10.69RR144 pKa = 11.84MYY146 pKa = 8.85NDD148 pKa = 2.99KK149 pKa = 11.3GIGFPIEE156 pKa = 3.8GMNFHH161 pKa = 6.75MFAVGGEE168 pKa = 4.05PLEE171 pKa = 4.35LQAVTSNYY179 pKa = 7.35KK180 pKa = 9.37TNYY183 pKa = 8.66PDD185 pKa = 3.58GTVKK189 pKa = 10.68PPVKK193 pKa = 10.57AKK195 pKa = 8.27TQQVLDD201 pKa = 3.95PQYY204 pKa = 10.88KK205 pKa = 10.44AKK207 pKa = 10.46LLKK210 pKa = 10.86DD211 pKa = 3.17GAYY214 pKa = 9.64PIEE217 pKa = 4.66LWAPDD222 pKa = 3.61PSMNEE227 pKa = 3.34NTRR230 pKa = 11.84YY231 pKa = 9.36YY232 pKa = 11.08GSYY235 pKa = 9.74TGGQSTPPVLQFTNTVTTVLLDD257 pKa = 3.84EE258 pKa = 5.12NGVGPLCKK266 pKa = 10.13GDD268 pKa = 4.16ALYY271 pKa = 8.95LTAADD276 pKa = 2.74IVGFHH281 pKa = 6.32TNAAEE286 pKa = 3.98TMAYY290 pKa = 9.9RR291 pKa = 11.84GLPRR295 pKa = 11.84YY296 pKa = 10.01FNVTLRR302 pKa = 11.84KK303 pKa = 9.36RR304 pKa = 11.84AVKK307 pKa = 10.4NPYY310 pKa = 9.15PVSTLLNNLFTGYY323 pKa = 9.98LPKK326 pKa = 10.56VEE328 pKa = 4.18GQPMNDD334 pKa = 3.13KK335 pKa = 10.66NGEE338 pKa = 4.03VGQVEE343 pKa = 4.47EE344 pKa = 4.15VRR346 pKa = 11.84VYY348 pKa = 11.12EE349 pKa = 4.42GMEE352 pKa = 4.1PTPGDD357 pKa = 3.56PDD359 pKa = 3.76MIRR362 pKa = 11.84YY363 pKa = 9.33LDD365 pKa = 3.61EE366 pKa = 5.19FGQQKK371 pKa = 9.02TSPNMNN377 pKa = 3.48

Molecular weight: 41.29 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1584

197

697

396.0

44.57

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.503 ± 0.814

2.525 ± 0.648

5.366 ± 0.394

6.755 ± 0.368

4.293 ± 0.794

6.692 ± 0.677

2.146 ± 0.392

4.419 ± 0.599

6.692 ± 1.15

9.848 ± 0.482

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.093 ± 0.366

4.545 ± 0.837

5.808 ± 1.006

3.535 ± 0.094

4.293 ± 0.417

6.566 ± 0.876

5.24 ± 0.839

6.187 ± 0.635

1.515 ± 0.397

3.977 ± 0.561
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski