Duganella ginsengisoli

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Betaproteobacteria; Burkholderiales; Oxalobacteraceae; Duganella

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5918 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A6L6Q9A2|A0A6L6Q9A2_9BURK Uncharacterized protein OS=Duganella ginsengisoli OX=1462440 GN=GM668_29535 PE=4 SV=1
MM1 pKa = 7.86SDD3 pKa = 3.39LTAPSLKK10 pKa = 10.52SVTFTNSTANASAVNTSADD29 pKa = 3.09IVLTFSEE36 pKa = 4.78AMTSGTGLITISDD49 pKa = 4.49GATQTYY55 pKa = 8.45MGKK58 pKa = 10.2DD59 pKa = 2.98GTLRR63 pKa = 11.84TRR65 pKa = 11.84LVGATDD71 pKa = 3.26TRR73 pKa = 11.84TVDD76 pKa = 3.62ISDD79 pKa = 3.8TSQVTVSGDD88 pKa = 3.24TVTINLASDD97 pKa = 3.96LKK99 pKa = 10.78AGKK102 pKa = 9.89SYY104 pKa = 10.56SVQMGKK110 pKa = 10.57GVLLDD115 pKa = 3.78EE116 pKa = 5.65AGNAYY121 pKa = 10.31AGLSDD126 pKa = 3.5TTKK129 pKa = 11.15LKK131 pKa = 9.6FTTSAATLPTAVVDD145 pKa = 3.86STFTITDD152 pKa = 3.69TGSSASDD159 pKa = 4.47FITSSAVQTIAGKK172 pKa = 10.95VNGALLAGEE181 pKa = 4.42AVMVSLDD188 pKa = 4.74NGGTWAAATVNAADD202 pKa = 4.14STWSIGGTVTGSSTIIARR220 pKa = 11.84VVNAEE225 pKa = 4.09GNASAAARR233 pKa = 11.84HH234 pKa = 6.32AYY236 pKa = 9.06TFDD239 pKa = 3.25TDD241 pKa = 3.38APTVGSIAINDD252 pKa = 3.68TDD254 pKa = 4.12LVAGEE259 pKa = 4.32TATVTVTFNEE269 pKa = 4.36AVTGLDD275 pKa = 3.13VSDD278 pKa = 3.95FTVEE282 pKa = 4.03GGALSSLATADD293 pKa = 4.31NGKK296 pKa = 7.63TWTATLTPTKK306 pKa = 10.29GVSTTTGTVTLNAGSVADD324 pKa = 4.0LAGNSGPANSSSKK337 pKa = 9.78PFNYY341 pKa = 8.93STVPDD346 pKa = 4.14APTATVTSISMTDD359 pKa = 3.3TGSSATDD366 pKa = 4.37FITNSTSQTIKK377 pKa = 9.49GTYY380 pKa = 9.73SGTLAADD387 pKa = 4.28EE388 pKa = 4.75YY389 pKa = 10.97IQVSLDD395 pKa = 3.7NGSTWTKK402 pKa = 9.82ATVSGSNWEE411 pKa = 4.12VAGATISASNTLKK424 pKa = 10.79ARR426 pKa = 11.84VFNDD430 pKa = 3.19YY431 pKa = 10.2TYY433 pKa = 11.08SNPMAQAYY441 pKa = 7.86TLDD444 pKa = 3.55QTAPTATVTLDD455 pKa = 3.09KK456 pKa = 11.42AHH458 pKa = 6.61LKK460 pKa = 10.47KK461 pKa = 11.16GEE463 pKa = 4.17TATITITFSEE473 pKa = 4.79AVTGLTSADD482 pKa = 3.03IKK484 pKa = 11.62SNDD487 pKa = 3.65TVGTPVSTDD496 pKa = 3.05GGVTWTATLTPTNNGNGSVTLYY518 pKa = 10.76ASSVTDD524 pKa = 3.5LAGNSGPAADD534 pKa = 3.82VAATYY539 pKa = 10.78SSDD542 pKa = 3.35LTRR545 pKa = 11.84PTATISLADD554 pKa = 3.5SALTAGEE561 pKa = 4.36TTLVTITFSEE571 pKa = 4.44AVTEE575 pKa = 4.19FTNADD580 pKa = 3.6LTVGNGTLSTVTSTDD595 pKa = 3.2GGTTWTATLTPTASTTATTNVITLDD620 pKa = 3.47NTAVSDD626 pKa = 3.84LAGNTGIGSTSSANYY641 pKa = 9.31SVSTVRR647 pKa = 11.84PTATINIADD656 pKa = 4.02TALTAGEE663 pKa = 4.41TTTVTFTFSSAVTGFDD679 pKa = 3.3ASDD682 pKa = 3.29VTVANGTISTPTTTDD697 pKa = 3.13NITWTATLTPSASTEE712 pKa = 3.85DD713 pKa = 3.56TTNVITLANTGFHH726 pKa = 6.5NSAGNSGTGTTTSGNYY742 pKa = 8.72TVDD745 pKa = 3.35TARR748 pKa = 11.84PTATISLADD757 pKa = 3.49TALTVGEE764 pKa = 4.51TTTVTVKK771 pKa = 10.46FSEE774 pKa = 4.31AVTGFSASSLSVANGTISSLTSSDD798 pKa = 3.47NITWTGTLTPTASQEE813 pKa = 3.91DD814 pKa = 4.19STNVITLNNSGVSDD828 pKa = 3.61AAGNTGSGTTTSANYY843 pKa = 9.02TVDD846 pKa = 3.31TLRR849 pKa = 11.84PTATISLADD858 pKa = 3.5SALTAGEE865 pKa = 4.35TTTVSITFSEE875 pKa = 5.01VVTGLTTADD884 pKa = 3.35LTVANGTLTSLQSSDD899 pKa = 3.04GMNWTATLTPSASTDD914 pKa = 3.14DD915 pKa = 3.77TTNVITLDD923 pKa = 3.35NTGITDD929 pKa = 3.63ASGNAGSGTTTSANYY944 pKa = 8.53TVATVRR950 pKa = 11.84PTATIAVSDD959 pKa = 4.02TALKK963 pKa = 9.91TGDD966 pKa = 3.6TATVTITFSEE976 pKa = 4.55AVTGLTAADD985 pKa = 3.35FTVANGTLSTPTTTDD1000 pKa = 3.09NITWTATLTPTSSIEE1015 pKa = 3.9DD1016 pKa = 3.71TTNVITLDD1024 pKa = 3.54NTGVTDD1030 pKa = 3.43SDD1032 pKa = 4.3GNTGSGTTSSSNYY1045 pKa = 9.21TVDD1048 pKa = 3.26TKK1050 pKa = 11.59APTATIALSQPEE1062 pKa = 4.87LLTGEE1067 pKa = 4.36TSTVTITFNEE1077 pKa = 4.26AVTGLTLADD1086 pKa = 4.31FKK1088 pKa = 11.72YY1089 pKa = 10.16SGTMTAPVSTDD1100 pKa = 3.26GGTTWVATLTPSTEE1114 pKa = 4.09SSSGEE1119 pKa = 3.72VRR1121 pKa = 11.84LNTSSVTDD1129 pKa = 3.37SAGNSGPSSEE1139 pKa = 5.13AYY1141 pKa = 10.35ASFTYY1146 pKa = 10.35NAAPTATIATASITDD1161 pKa = 3.64TGTSGDD1167 pKa = 4.69FITSSTSQEE1176 pKa = 3.56ISGTLSAALGRR1187 pKa = 11.84GQYY1190 pKa = 9.81VQVSLDD1196 pKa = 3.59NGEE1199 pKa = 4.36SWTTATTIGTGWSLSGQTISHH1220 pKa = 6.52SSTLKK1225 pKa = 9.98VRR1227 pKa = 11.84ATNGSSTSTTYY1238 pKa = 10.48SHH1240 pKa = 7.41SYY1242 pKa = 9.6TLDD1245 pKa = 3.04QAAPTAPTITLSKK1258 pKa = 10.57DD1259 pKa = 3.08ALYY1262 pKa = 10.33TNQTATVTVVFDD1274 pKa = 3.44EE1275 pKa = 4.4AVYY1278 pKa = 10.95GLTASDD1284 pKa = 3.62FTISGGTLGTFSTSDD1299 pKa = 3.33NLTWTATLTPTATGSLALAASSVYY1323 pKa = 9.49DD1324 pKa = 3.3TAGNVGPTSASSSKK1338 pKa = 10.94SFTFTADD1345 pKa = 3.1TTGPTATLTLNDD1357 pKa = 3.44NTLGKK1362 pKa = 10.69GGTATLTVTLSEE1374 pKa = 4.6AVTDD1378 pKa = 3.99TPTASDD1384 pKa = 3.7FTVSGGSLGTFTSTDD1399 pKa = 3.07SGLTWTATLTPTDD1412 pKa = 3.54SAYY1415 pKa = 10.5GAGTISLSANAISDD1429 pKa = 3.5QSGNTGPSSAASLPFYY1445 pKa = 10.9YY1446 pKa = 9.36DD1447 pKa = 3.27TQALTLSSSIAFSTDD1462 pKa = 2.79SGEE1465 pKa = 4.31SGSDD1469 pKa = 3.68LITNTGTQTISGTYY1483 pKa = 9.53SGGTIYY1489 pKa = 10.04STMGDD1494 pKa = 3.82KK1495 pKa = 10.7IEE1497 pKa = 4.01VSTDD1501 pKa = 3.07NGSTWSEE1508 pKa = 3.83ATVSGQAWSISKK1520 pKa = 8.57TLSGSDD1526 pKa = 3.61TIQVRR1531 pKa = 11.84LTDD1534 pKa = 3.76GTGVAGTPVSHH1545 pKa = 7.29TYY1547 pKa = 10.22TIDD1550 pKa = 3.33TTSPGSMSSKK1560 pKa = 10.39IPDD1563 pKa = 3.7LASSSDD1569 pKa = 3.28TSNGVSGGTSDD1580 pKa = 6.36DD1581 pKa = 3.42ITSNTTPVITYY1592 pKa = 10.16SLYY1595 pKa = 11.07NSGLTAGDD1603 pKa = 3.75YY1604 pKa = 11.15VDD1606 pKa = 5.57VYY1608 pKa = 11.09DD1609 pKa = 4.31TTTSTILHH1617 pKa = 5.71THH1619 pKa = 7.28TITSSEE1625 pKa = 4.04LTSYY1629 pKa = 10.99GGTVSATVSEE1639 pKa = 4.85LSAGSHH1645 pKa = 5.06SLVLRR1650 pKa = 11.84SRR1652 pKa = 11.84DD1653 pKa = 3.34AAGNTGTQSQALALTIDD1670 pKa = 3.94TSAISMAGKK1679 pKa = 8.12TVDD1682 pKa = 4.07LAASSDD1688 pKa = 3.84SGTSSTDD1695 pKa = 3.14NITNNSAPTVTVNVANTSGLVAGDD1719 pKa = 3.59KK1720 pKa = 10.83LQIIDD1725 pKa = 4.35SSNGDD1730 pKa = 3.64AVVGTYY1736 pKa = 9.34TLTSTDD1742 pKa = 4.05FSSSGADD1749 pKa = 3.13INITLSTLTDD1759 pKa = 3.51GTHH1762 pKa = 6.55ALALRR1767 pKa = 11.84VYY1769 pKa = 10.56DD1770 pKa = 3.6RR1771 pKa = 11.84AGNTGTASSATSITIDD1787 pKa = 3.81TIAPSLSSSTPSSSSTSNSVSTSSVTLVFSEE1818 pKa = 4.54ALADD1822 pKa = 3.79VNSRR1826 pKa = 11.84TGFKK1830 pKa = 9.55VTDD1833 pKa = 3.86GANDD1837 pKa = 3.17ARR1839 pKa = 11.84EE1840 pKa = 4.15ITGEE1844 pKa = 3.97ALSGNTLSYY1853 pKa = 11.2DD1854 pKa = 3.71SSTHH1858 pKa = 5.29TATLSLSGSLQYY1870 pKa = 11.47ASTYY1874 pKa = 8.08TVYY1877 pKa = 10.73VYY1879 pKa = 10.91NAALSDD1885 pKa = 3.56TAGNSVAIDD1894 pKa = 3.44TALLSFSTEE1903 pKa = 4.24SVPTPSAVTLAMTEE1917 pKa = 4.0STYY1920 pKa = 11.33ASHH1923 pKa = 7.16TGTDD1927 pKa = 3.42NDD1929 pKa = 5.27HH1930 pKa = 6.35ITNNATLCVSGITAAYY1946 pKa = 9.69LRR1948 pKa = 11.84YY1949 pKa = 10.06KK1950 pKa = 9.49LTSNAGWTTVQTSGSTYY1967 pKa = 10.41SIPLSDD1973 pKa = 3.97DD1974 pKa = 3.24TYY1976 pKa = 10.67AAGVIQVEE1984 pKa = 4.6QYY1986 pKa = 8.96DD1987 pKa = 3.95TAGYY1991 pKa = 9.77EE1992 pKa = 4.13STAATLSDD2000 pKa = 3.47SWTVDD2005 pKa = 2.83TSSPSGRR2012 pKa = 11.84ISTSTSGLPSFTGLGINTAISTITGSVSGEE2042 pKa = 3.87FNLDD2046 pKa = 3.5DD2047 pKa = 4.26EE2048 pKa = 5.28FIEE2051 pKa = 4.38YY2052 pKa = 7.59TTDD2055 pKa = 4.69SGSTWTKK2062 pKa = 10.18ASAMTAFIWTIADD2075 pKa = 3.39VKK2077 pKa = 10.34VAAGGEE2083 pKa = 3.94IGFRR2087 pKa = 11.84ASDD2090 pKa = 3.16KK2091 pKa = 11.0AGNIGYY2097 pKa = 10.03YY2098 pKa = 10.75GEE2100 pKa = 4.16TSNYY2104 pKa = 7.35TVYY2107 pKa = 11.01VGDD2110 pKa = 4.61DD2111 pKa = 3.06SAGNHH2116 pKa = 5.57TATGSKK2122 pKa = 10.34YY2123 pKa = 10.69LYY2125 pKa = 8.71TQAGNDD2131 pKa = 3.89TIDD2134 pKa = 3.0ITGASNAVHH2143 pKa = 6.81AGSGNDD2149 pKa = 3.85AININSASTTNHH2161 pKa = 5.5VYY2163 pKa = 11.14GDD2165 pKa = 4.07GGSDD2169 pKa = 3.55TINVNGSHH2177 pKa = 6.68NSQIEE2182 pKa = 4.07GGADD2186 pKa = 3.34ADD2188 pKa = 4.56TITVTGSYY2196 pKa = 10.64NYY2198 pKa = 10.38VYY2200 pKa = 10.98GNDD2203 pKa = 3.78GDD2205 pKa = 4.25DD2206 pKa = 3.6TLSISGTYY2214 pKa = 7.9NTVYY2218 pKa = 10.82GDD2220 pKa = 3.51NSEE2223 pKa = 4.33TGDD2226 pKa = 3.6TGADD2230 pKa = 3.63TITVSGSSNTVDD2242 pKa = 3.87AGPGANSITVTGADD2256 pKa = 3.31NTVTGGSDD2264 pKa = 3.1TDD2266 pKa = 4.18TISVSSTGNTVYY2278 pKa = 10.84GGDD2281 pKa = 3.65SADD2284 pKa = 4.02TITVATSGNTIYY2296 pKa = 11.23GEE2298 pKa = 4.15AGADD2302 pKa = 3.52QFTVAALGSNIYY2314 pKa = 10.67GGDD2317 pKa = 3.55GSDD2320 pKa = 3.33TFTVTASLAGTLSGLIDD2337 pKa = 4.31GGTDD2341 pKa = 3.18GTDD2344 pKa = 3.16VLNIGVSSQTLSLSTLTSNIAHH2366 pKa = 6.91IEE2368 pKa = 4.14KK2369 pKa = 10.33ISLGTSNTLTISGAAIQTMSDD2390 pKa = 2.89TDD2392 pKa = 4.0SIRR2395 pKa = 11.84FEE2397 pKa = 4.47GDD2399 pKa = 3.13STDD2402 pKa = 3.35TIYY2405 pKa = 11.33YY2406 pKa = 10.3DD2407 pKa = 3.33SSLWEE2412 pKa = 4.02SATWIQILGYY2422 pKa = 10.35NKK2424 pKa = 10.12YY2425 pKa = 8.42QLKK2428 pKa = 10.49SDD2430 pKa = 3.56TTITFIIDD2438 pKa = 3.45SDD2440 pKa = 3.31IHH2442 pKa = 8.31LYY2444 pKa = 11.12GLTSS2448 pKa = 3.21

Molecular weight: 246.53 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A6L6Q7R1|A0A6L6Q7R1_9BURK Uncharacterized protein OS=Duganella ginsengisoli OX=1462440 GN=GM668_27725 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.36RR3 pKa = 11.84TYY5 pKa = 9.97QPSVVRR11 pKa = 11.84RR12 pKa = 11.84KK13 pKa = 8.57RR14 pKa = 11.84THH16 pKa = 5.79GFRR19 pKa = 11.84ARR21 pKa = 11.84MATRR25 pKa = 11.84GGRR28 pKa = 11.84QVLNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 9.65GRR39 pKa = 11.84KK40 pKa = 8.72RR41 pKa = 11.84LAVVV45 pKa = 3.61

Molecular weight: 5.28 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5918

0

5918

2124225

37

12803

358.9

38.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.019 ± 0.053

0.883 ± 0.011

5.416 ± 0.023

4.965 ± 0.034

3.404 ± 0.02

8.152 ± 0.041

2.235 ± 0.019

4.56 ± 0.025

3.676 ± 0.031

10.305 ± 0.05

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.638 ± 0.018

3.149 ± 0.025

4.916 ± 0.03

4.261 ± 0.028

6.155 ± 0.042

5.571 ± 0.036

5.439 ± 0.05

7.301 ± 0.034

1.325 ± 0.014

2.629 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski