Pedococcus cremeus

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Micrococcales; Intrasporangiaceae; Pedococcus

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4010 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1H9TWV2|A0A1H9TWV2_9MICO Cardiolipin synthase OS=Pedococcus cremeus OX=587636 GN=SAMN05216199_1789 PE=3 SV=1
MM1 pKa = 7.68SEE3 pKa = 4.26LEE5 pKa = 4.08YY6 pKa = 10.75PEE8 pKa = 4.46DD9 pKa = 3.33LRR11 pKa = 11.84YY12 pKa = 7.8TAEE15 pKa = 4.25HH16 pKa = 5.63EE17 pKa = 4.27WVRR20 pKa = 11.84TGDD23 pKa = 3.53GGVVRR28 pKa = 11.84VGITSFAQDD37 pKa = 3.07ALGDD41 pKa = 3.82VVYY44 pKa = 11.18VSLPTVGDD52 pKa = 3.62TVAAGDD58 pKa = 3.41ACGEE62 pKa = 4.23VEE64 pKa = 4.37STKK67 pKa = 10.7SVSDD71 pKa = 4.31LYY73 pKa = 11.48SPLAGEE79 pKa = 4.13VTAVNEE85 pKa = 4.31ALDD88 pKa = 3.89ATPEE92 pKa = 4.05LVNTDD97 pKa = 3.69PYY99 pKa = 11.34GEE101 pKa = 3.76GWMYY105 pKa = 10.18EE106 pKa = 4.23LKK108 pKa = 10.61VDD110 pKa = 4.46DD111 pKa = 4.48LAAVEE116 pKa = 4.69ALMDD120 pKa = 3.4QAAYY124 pKa = 10.47RR125 pKa = 11.84EE126 pKa = 4.17QLGG129 pKa = 3.45

Molecular weight: 13.81 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1H9XBC6|A0A1H9XBC6_9MICO Fructose-1 6-bisphosphatase OS=Pedococcus cremeus OX=587636 GN=SAMN05216199_3607 PE=4 SV=1
MM1 pKa = 7.19GRR3 pKa = 11.84QVGRR7 pKa = 11.84QVGRR11 pKa = 11.84QVGRR15 pKa = 11.84QVGRR19 pKa = 11.84QVGRR23 pKa = 11.84QMGRR27 pKa = 11.84LARR30 pKa = 11.84AVRR33 pKa = 11.84LGSGG37 pKa = 3.19

Molecular weight: 4.02 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4010

0

4010

1306711

30

2118

325.9

34.81

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.402 ± 0.059

0.712 ± 0.01

5.883 ± 0.032

5.558 ± 0.046

2.757 ± 0.023

9.367 ± 0.038

2.275 ± 0.02

3.055 ± 0.027

2.052 ± 0.032

10.311 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.857 ± 0.015

1.745 ± 0.022

5.73 ± 0.031

2.952 ± 0.025

7.626 ± 0.042

5.404 ± 0.028

6.152 ± 0.037

9.633 ± 0.035

1.615 ± 0.018

1.913 ± 0.018
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski