Scophthalmus maximus rhabdovirus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; unclassified Rhabdoviridae

Average proteome isoelectric point is 6.76

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E7D0U3|E7D0U3_9RHAB C protein OS=Scophthalmus maximus rhabdovirus OX=936149 GN=C PE=4 SV=1
MM1 pKa = 7.29SHH3 pKa = 6.7GLSKK7 pKa = 10.88SRR9 pKa = 11.84TFEE12 pKa = 4.28EE13 pKa = 4.11ITDD16 pKa = 3.77VEE18 pKa = 4.29QVLDD22 pKa = 4.3NIRR25 pKa = 11.84QTEE28 pKa = 4.38SKK30 pKa = 10.51LGTSAGAGASDD41 pKa = 3.8EE42 pKa = 4.63PYY44 pKa = 10.15PAGGDD49 pKa = 3.62LPPASGGFRR58 pKa = 11.84YY59 pKa = 10.0LSSQEE64 pKa = 3.69EE65 pKa = 4.32GSYY68 pKa = 10.5KK69 pKa = 10.45EE70 pKa = 5.82EE71 pKa = 3.86EE72 pKa = 4.54DD73 pKa = 3.08NWLINQSRR81 pKa = 11.84AAKK84 pKa = 9.91LVAPLADD91 pKa = 3.52YY92 pKa = 10.87RR93 pKa = 11.84LAAAADD99 pKa = 4.1KK100 pKa = 10.98DD101 pKa = 4.03PSPEE105 pKa = 4.17PEE107 pKa = 3.86DD108 pKa = 3.22QRR110 pKa = 11.84RR111 pKa = 11.84EE112 pKa = 3.8IEE114 pKa = 3.92EE115 pKa = 4.64RR116 pKa = 11.84IAEE119 pKa = 4.21AHH121 pKa = 5.98DD122 pKa = 3.5QMLKK126 pKa = 10.82FEE128 pKa = 4.79MFPYY132 pKa = 9.84TYY134 pKa = 10.93FMPDD138 pKa = 3.23YY139 pKa = 10.37LKK141 pKa = 10.99SEE143 pKa = 4.26DD144 pKa = 3.72QQEE147 pKa = 4.25LVHH150 pKa = 6.81FLTEE154 pKa = 3.71ILGPRR159 pKa = 11.84NSNRR163 pKa = 11.84DD164 pKa = 2.94FWIRR168 pKa = 11.84GTHH171 pKa = 5.82IPTMCWRR178 pKa = 11.84NGDD181 pKa = 3.41MHH183 pKa = 7.82IQDD186 pKa = 4.4DD187 pKa = 4.58VEE189 pKa = 4.68SKK191 pKa = 10.89SSGVSGLTKK200 pKa = 10.37ALKK203 pKa = 10.05SVQFVDD209 pKa = 4.53PGEE212 pKa = 4.05QDD214 pKa = 3.24SATVEE219 pKa = 4.19SEE221 pKa = 3.42MDD223 pKa = 3.73RR224 pKa = 11.84DD225 pKa = 3.8LDD227 pKa = 4.04CYY229 pKa = 11.19SIGEE233 pKa = 4.19SSLVSEE239 pKa = 5.05FMLDD243 pKa = 3.22TSDD246 pKa = 5.62LMEE249 pKa = 4.49SLNRR253 pKa = 11.84EE254 pKa = 3.82WLVATKK260 pKa = 10.24KK261 pKa = 10.8GRR263 pKa = 11.84WKK265 pKa = 9.53TLGPLFLRR273 pKa = 11.84PLAQDD278 pKa = 3.26RR279 pKa = 11.84ALMKK283 pKa = 10.28TILSEE288 pKa = 3.98MRR290 pKa = 11.84EE291 pKa = 3.95KK292 pKa = 10.93DD293 pKa = 3.15VTEE296 pKa = 4.08QMSCLLTSNEE306 pKa = 3.8LTSRR310 pKa = 11.84FVRR313 pKa = 11.84TLDD316 pKa = 4.1LGTLKK321 pKa = 10.44MKK323 pKa = 10.85GSFF326 pKa = 3.44

Molecular weight: 36.83 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E7D0U2|E7D0U2_9RHAB Phosphoprotein OS=Scophthalmus maximus rhabdovirus OX=936149 GN=P PE=4 SV=1
MM1 pKa = 6.98EE2 pKa = 4.44QVAKK6 pKa = 10.81CLMDD10 pKa = 3.82YY11 pKa = 10.33QNRR14 pKa = 11.84AHH16 pKa = 6.91LRR18 pKa = 11.84RR19 pKa = 11.84SRR21 pKa = 11.84MLNRR25 pKa = 11.84YY26 pKa = 4.69WTTYY30 pKa = 10.84DD31 pKa = 3.41KK32 pKa = 11.16QSPSWGRR39 pKa = 11.84LLEE42 pKa = 4.56RR43 pKa = 11.84EE44 pKa = 4.04RR45 pKa = 11.84QMNPIPPEE53 pKa = 4.16VIYY56 pKa = 10.37HH57 pKa = 5.31QLPVDD62 pKa = 5.33LGTCPLKK69 pKa = 10.69RR70 pKa = 11.84RR71 pKa = 11.84GAIRR75 pKa = 11.84RR76 pKa = 11.84KK77 pKa = 8.7RR78 pKa = 11.84TTGSSTNPEE87 pKa = 3.99PQSWWLRR94 pKa = 11.84LPIIGWLLQRR104 pKa = 11.84IRR106 pKa = 11.84TLVLNRR112 pKa = 11.84RR113 pKa = 11.84TNGGRR118 pKa = 3.21

Molecular weight: 14.14 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

3843

110

2116

549.0

62.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.557 ± 1.05

1.717 ± 0.353

5.491 ± 0.418

6.193 ± 0.548

3.435 ± 0.391

6.063 ± 0.291

2.42 ± 0.281

5.517 ± 0.564

5.673 ± 0.344

9.576 ± 0.701

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.227 ± 0.119

4.059 ± 0.266

4.97 ± 0.434

3.487 ± 0.208

6.089 ± 0.863

8.171 ± 0.722

6.167 ± 0.279

5.881 ± 0.746

2.212 ± 0.202

3.097 ± 0.309
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski