Capnocytophaga sp. oral taxon 338 str. F0234

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga; unclassified Capnocytophaga; Capnocytophaga sp. oral taxon 338

Average proteome isoelectric point is 6.92

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2444 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|F0IDB7|F0IDB7_9FLAO Uncharacterized protein OS=Capnocytophaga sp. oral taxon 338 str. F0234 OX=888059 GN=HMPREF9071_0507 PE=4 SV=1
MM1 pKa = 7.73SLEE4 pKa = 4.48SIITHH9 pKa = 5.62YY10 pKa = 10.6RR11 pKa = 11.84NCLAALPDD19 pKa = 3.84VILIGEE25 pKa = 4.19IPEE28 pKa = 4.39GAEE31 pKa = 4.35SIPQEE36 pKa = 4.03VSDD39 pKa = 4.22WGVPAYY45 pKa = 10.58SAFLRR50 pKa = 11.84LCNGGSFGDD59 pKa = 3.72IILWSTEE66 pKa = 3.72EE67 pKa = 4.56LLDD70 pKa = 3.53NQYY73 pKa = 10.57RR74 pKa = 11.84IPSDD78 pKa = 3.4QPSWCEE84 pKa = 3.46IGQLLYY90 pKa = 11.02APLFLDD96 pKa = 3.54KK97 pKa = 10.0HH98 pKa = 4.89TQHH101 pKa = 7.29LIFPADD107 pKa = 3.3SYY109 pKa = 11.82EE110 pKa = 4.43GIEE113 pKa = 4.44EE114 pKa = 4.13IDD116 pKa = 3.26VDD118 pKa = 4.15FDD120 pKa = 4.16TFVKK124 pKa = 10.47EE125 pKa = 4.11YY126 pKa = 10.59IFGSKK131 pKa = 10.18YY132 pKa = 8.85KK133 pKa = 10.3EE134 pKa = 3.85KK135 pKa = 10.5IIGYY139 pKa = 9.95DD140 pKa = 3.35EE141 pKa = 6.35ANDD144 pKa = 3.71DD145 pKa = 3.89WSDD148 pKa = 3.59FLNN151 pKa = 3.87

Molecular weight: 17.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|F0IH38|F0IH38_9FLAO Uncharacterized protein OS=Capnocytophaga sp. oral taxon 338 str. F0234 OX=888059 GN=HMPREF9071_1885 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.19RR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.93VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.3KK41 pKa = 9.83LTVSSEE47 pKa = 3.9PRR49 pKa = 11.84HH50 pKa = 5.77KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2444

0

2444

750425

38

3423

307.0

34.98

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.143 ± 0.048

0.863 ± 0.017

4.92 ± 0.03

7.001 ± 0.058

5.182 ± 0.045

6.05 ± 0.054

1.912 ± 0.021

8.007 ± 0.057

8.045 ± 0.055

9.538 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.153 ± 0.02

5.29 ± 0.045

3.622 ± 0.036

3.947 ± 0.035

3.922 ± 0.029

6.055 ± 0.032

5.823 ± 0.058

5.808 ± 0.048

1.048 ± 0.017

4.672 ± 0.041
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski