Apteryx rowi circovirus-like virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cirlivirales; Circoviridae; unclassified Circoviridae

Average proteome isoelectric point is 7.43

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0F6TGK2|A0A0F6TGK2_9CIRC ATP-dependent helicase Rep OS=Apteryx rowi circovirus-like virus OX=1634476 PE=3 SV=1
MM1 pKa = 7.4SKK3 pKa = 10.33ARR5 pKa = 11.84HH6 pKa = 4.78WCFTLNNPDD15 pKa = 4.87DD16 pKa = 4.65EE17 pKa = 5.95PDD19 pKa = 3.6LSDD22 pKa = 4.08TNIQYY27 pKa = 10.78AIYY30 pKa = 9.98QMEE33 pKa = 4.65IAPHH37 pKa = 6.31TDD39 pKa = 2.92TPHH42 pKa = 5.22FQGYY46 pKa = 10.01IILFKK51 pKa = 10.35KK52 pKa = 9.91QRR54 pKa = 11.84LAWVRR59 pKa = 11.84AVLPRR64 pKa = 11.84AHH66 pKa = 6.74WEE68 pKa = 3.87IARR71 pKa = 11.84GTPSQNRR78 pKa = 11.84DD79 pKa = 3.19YY80 pKa = 10.25CTKK83 pKa = 8.72PDD85 pKa = 3.52TRR87 pKa = 11.84IGEE90 pKa = 4.1PSEE93 pKa = 5.3LGLFPEE99 pKa = 5.31DD100 pKa = 3.48AGQGSRR106 pKa = 11.84TDD108 pKa = 3.38LQAVHH113 pKa = 6.93FALQHH118 pKa = 5.55GLTNKK123 pKa = 9.89EE124 pKa = 3.61YY125 pKa = 9.9ANQYY129 pKa = 7.72FSTWIRR135 pKa = 11.84YY136 pKa = 7.57PNLIDD141 pKa = 4.18TFAQSNIVPRR151 pKa = 11.84TGDD154 pKa = 3.49EE155 pKa = 4.26EE156 pKa = 4.45IEE158 pKa = 4.65CILIIGPPGTGKK170 pKa = 10.02SRR172 pKa = 11.84YY173 pKa = 9.05AEE175 pKa = 3.85RR176 pKa = 11.84LARR179 pKa = 11.84SYY181 pKa = 11.55NVGEE185 pKa = 4.42FFRR188 pKa = 11.84KK189 pKa = 9.28QRR191 pKa = 11.84GKK193 pKa = 9.83WYY195 pKa = 10.0DD196 pKa = 3.13GYY198 pKa = 11.04LGEE201 pKa = 5.02RR202 pKa = 11.84VIIFDD207 pKa = 4.08DD208 pKa = 4.06FRR210 pKa = 11.84GSSLSFTDD218 pKa = 5.04FKK220 pKa = 11.59LLVDD224 pKa = 4.69RR225 pKa = 11.84YY226 pKa = 9.8ALRR229 pKa = 11.84VEE231 pKa = 4.33VKK233 pKa = 10.24GRR235 pKa = 11.84YY236 pKa = 8.75VNMAATKK243 pKa = 9.74FIITTNLSPDD253 pKa = 3.23AWWGEE258 pKa = 4.24EE259 pKa = 3.88VTGPEE264 pKa = 3.98FPAISRR270 pKa = 11.84RR271 pKa = 11.84ITEE274 pKa = 3.81VLFFPEE280 pKa = 4.67LNSFCRR286 pKa = 11.84FDD288 pKa = 3.52SYY290 pKa = 11.29EE291 pKa = 4.01AYY293 pKa = 10.68LEE295 pKa = 3.93YY296 pKa = 10.74LRR298 pKa = 11.84PQLILPHH305 pKa = 6.55GLLPQAQAQYY315 pKa = 11.25AFQEE319 pKa = 4.39VIYY322 pKa = 10.8

Molecular weight: 37.32 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0F6TGK2|A0A0F6TGK2_9CIRC ATP-dependent helicase Rep OS=Apteryx rowi circovirus-like virus OX=1634476 PE=3 SV=1
MM1 pKa = 7.05VSYY4 pKa = 10.52RR5 pKa = 11.84KK6 pKa = 9.51RR7 pKa = 11.84KK8 pKa = 9.55RR9 pKa = 11.84SMRR12 pKa = 11.84SKK14 pKa = 10.99KK15 pKa = 10.52SFTKK19 pKa = 9.67IKK21 pKa = 10.21RR22 pKa = 11.84RR23 pKa = 11.84PRR25 pKa = 11.84VLNKK29 pKa = 9.72FKK31 pKa = 10.77RR32 pKa = 11.84KK33 pKa = 9.19NRR35 pKa = 11.84GSQRR39 pKa = 11.84IKK41 pKa = 8.39RR42 pKa = 11.84TRR44 pKa = 11.84WPVDD48 pKa = 3.11NPFGDD53 pKa = 3.43NLFYY57 pKa = 10.77KK58 pKa = 10.63VRR60 pKa = 11.84FSYY63 pKa = 8.93GTTLTIPTTASSINLGFQMNSLASIISSAGNAPGLNSLGNAFVNYY108 pKa = 9.96RR109 pKa = 11.84IRR111 pKa = 11.84GLKK114 pKa = 9.12TKK116 pKa = 7.79MTLWPDD122 pKa = 3.18SATVPIVAYY131 pKa = 9.48HH132 pKa = 6.73LAGASQSEE140 pKa = 4.59MASITPNVSTLPEE153 pKa = 4.26LRR155 pKa = 11.84WQKK158 pKa = 10.85YY159 pKa = 5.69RR160 pKa = 11.84TCNYY164 pKa = 9.15AAAGAKK170 pKa = 7.37PTRR173 pKa = 11.84LNSYY177 pKa = 9.44FSVDD181 pKa = 3.21KK182 pKa = 11.18VYY184 pKa = 11.13GPDD187 pKa = 3.13AVVKK191 pKa = 10.58NDD193 pKa = 3.31SNFVGNITTAAPPAPPVFGAPGLGPGFRR221 pKa = 11.84FGLFTMSGLNPTVAVNCVTKK241 pKa = 10.4IEE243 pKa = 4.06FTAYY247 pKa = 10.76VNFFSKK253 pKa = 10.5RR254 pKa = 11.84GIINN258 pKa = 3.34

Molecular weight: 28.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

580

258

322

290.0

32.93

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.586 ± 0.347

1.034 ± 0.163

4.138 ± 1.137

4.31 ± 1.974

6.207 ± 0.003

6.724 ± 0.402

1.379 ± 0.622

6.034 ± 0.624

5.172 ± 1.375

7.414 ± 0.76

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.552 ± 0.485

5.517 ± 1.402

6.552 ± 0.267

3.448 ± 1.19

7.586 ± 0.104

6.724 ± 1.374

6.724 ± 0.645

5.345 ± 1.023

1.724 ± 0.352

4.828 ± 0.597
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski