Xanthomarina gelatinilytica

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Xanthomarina

Average proteome isoelectric point is 6.56

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2841 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|M7N6T0|M7N6T0_9FLAO HTH cro/C1-type domain-containing protein OS=Xanthomarina gelatinilytica OX=1137281 GN=D778_01145 PE=3 SV=1
MM1 pKa = 7.47KK2 pKa = 10.4KK3 pKa = 9.73ILLTFLSFNAIIFAGFSQEE22 pKa = 3.67EE23 pKa = 4.67GFAIHH28 pKa = 6.31TVGPTGSNPYY38 pKa = 10.32VIDD41 pKa = 4.14SGHH44 pKa = 7.07LNPGAYY50 pKa = 8.79PDD52 pKa = 4.4LAVGTQSGNTVEE64 pKa = 5.12IYY66 pKa = 10.55INNEE70 pKa = 3.93DD71 pKa = 3.65GTFAAPIIKK80 pKa = 10.01NLSLVSGVHH89 pKa = 5.98IADD92 pKa = 3.08IDD94 pKa = 4.45GINGNDD100 pKa = 3.37VLASSSGGSKK110 pKa = 10.23LVWYY114 pKa = 9.97ANNGDD119 pKa = 3.69GTFADD124 pKa = 4.07EE125 pKa = 5.29AIISSSLDD133 pKa = 3.38TPGTIVTGYY142 pKa = 9.61IDD144 pKa = 4.34SDD146 pKa = 3.56ATLDD150 pKa = 3.51IVLSVYY156 pKa = 10.08GASGDD161 pKa = 3.54TDD163 pKa = 3.54RR164 pKa = 11.84VIWFANDD171 pKa = 3.36GLPWTEE177 pKa = 3.5QDD179 pKa = 4.05VVPATAGLGCGNIDD193 pKa = 3.58IADD196 pKa = 3.63VDD198 pKa = 4.18GDD200 pKa = 3.83TDD202 pKa = 4.83LDD204 pKa = 3.51IVVANTDD211 pKa = 3.01AGTVEE216 pKa = 5.4LYY218 pKa = 10.84YY219 pKa = 11.23NNYY222 pKa = 9.77NPLTDD227 pKa = 3.92NNPVSFTEE235 pKa = 4.21SAGGDD240 pKa = 2.85ISTGNTYY247 pKa = 10.95LFGLDD252 pKa = 3.89FGDD255 pKa = 4.13VNDD258 pKa = 4.94DD259 pKa = 3.42SFMDD263 pKa = 3.51IVKK266 pKa = 10.09VDD268 pKa = 3.85LSGHH272 pKa = 6.33EE273 pKa = 3.53IAYY276 pKa = 7.89YY277 pKa = 10.55QNDD280 pKa = 3.92GAGNFTEE287 pKa = 4.8VPVSSHH293 pKa = 5.8QYY295 pKa = 8.99PSIAFVTDD303 pKa = 4.1LNNDD307 pKa = 3.81GYY309 pKa = 11.48NDD311 pKa = 3.18IVAADD316 pKa = 4.25GLNQNDD322 pKa = 3.29DD323 pKa = 4.05MFWFEE328 pKa = 4.13SDD330 pKa = 3.08AFGGLGAEE338 pKa = 4.44TIITNNTLHH347 pKa = 5.78NQVYY351 pKa = 10.17NFTINDD357 pKa = 3.54FDD359 pKa = 4.42NDD361 pKa = 3.51GDD363 pKa = 3.93IDD365 pKa = 4.19FATLGYY371 pKa = 10.26QDD373 pKa = 4.99GTLKK377 pKa = 10.38WIEE380 pKa = 4.13NNLNLIGTQEE390 pKa = 4.04FKK392 pKa = 11.38LNTVSIYY399 pKa = 10.38PNPTSNRR406 pKa = 11.84IYY408 pKa = 10.83FKK410 pKa = 10.9GLTSNTEE417 pKa = 3.75RR418 pKa = 11.84VSVYY422 pKa = 10.62DD423 pKa = 3.45ILGKK427 pKa = 10.57KK428 pKa = 9.39ILSKK432 pKa = 9.74TVNTNKK438 pKa = 10.45GLDD441 pKa = 3.5VSKK444 pKa = 10.1LQNGIYY450 pKa = 9.79ILKK453 pKa = 9.96LDD455 pKa = 4.43QLNTSYY461 pKa = 11.5KK462 pKa = 9.75FVKK465 pKa = 10.24KK466 pKa = 10.63

Molecular weight: 50.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|M7N096|M7N096_9FLAO Two-component system sensor histidine kinase/response OS=Xanthomarina gelatinilytica OX=1137281 GN=D778_02690 PE=4 SV=1
MM1 pKa = 8.08DD2 pKa = 5.78LLRR5 pKa = 11.84HH6 pKa = 5.76VIIVTKK12 pKa = 10.47NPNGSVCKK20 pKa = 10.35NYY22 pKa = 10.48NPNIRR27 pKa = 11.84NHH29 pKa = 5.38VKK31 pKa = 10.29RR32 pKa = 11.84NQKK35 pKa = 9.71ILIRR39 pKa = 11.84EE40 pKa = 4.11

Molecular weight: 4.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2841

0

2841

902307

37

3221

317.6

35.87

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.337 ± 0.044

0.761 ± 0.018

5.497 ± 0.034

6.52 ± 0.051

5.266 ± 0.034

6.13 ± 0.054

1.967 ± 0.022

7.877 ± 0.038

7.815 ± 0.068

9.442 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.262 ± 0.029

6.346 ± 0.057

3.377 ± 0.026

3.578 ± 0.032

3.087 ± 0.033

6.331 ± 0.037

5.986 ± 0.052

6.28 ± 0.038

0.989 ± 0.018

4.151 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski