Bacillus taxi

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Bacilli; Bacillales; Bacillaceae; Niallia

Average proteome isoelectric point is 6.31

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5402 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3S2TV05|A0A3S2TV05_9BACI Malate dehydrogenase OS=Bacillus taxi OX=2499688 GN=mdh PE=3 SV=1
MM1 pKa = 7.94PIALQAFTNTANTVRR16 pKa = 11.84IADD19 pKa = 3.84SATAPGPVVTVGPQIPLVDD38 pKa = 4.25GNSSYY43 pKa = 10.38IWSPVSVSGQTVTFRR58 pKa = 11.84SVFSLGAPLLGIALPLTVFYY78 pKa = 10.4AYY80 pKa = 10.37AGNEE84 pKa = 4.35TVSVTGTLQVLDD96 pKa = 3.77VLGVIVLTIPLFSGDD111 pKa = 3.84TNLGNPLNVSTIAADD126 pKa = 3.71TLLAASILGGTINITIDD143 pKa = 3.44AVVTAPITTPYY154 pKa = 10.57EE155 pKa = 3.85PVNTGRR161 pKa = 11.84YY162 pKa = 8.69LGEE165 pKa = 3.84ITVQTIVV172 pKa = 3.09

Molecular weight: 17.64 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3S2X3A1|A0A3S2X3A1_9BACI Alcohol dehydrogenase OS=Bacillus taxi OX=2499688 GN=EM808_12390 PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 9.59RR3 pKa = 11.84TFQPNKK9 pKa = 8.24RR10 pKa = 11.84KK11 pKa = 9.6RR12 pKa = 11.84SKK14 pKa = 9.59VHH16 pKa = 5.83GFRR19 pKa = 11.84SRR21 pKa = 11.84MSSPNGRR28 pKa = 11.84NVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84RR36 pKa = 11.84KK37 pKa = 9.05GRR39 pKa = 11.84KK40 pKa = 8.7VLSAA44 pKa = 4.05

Molecular weight: 5.24 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5402

0

5402

1569371

26

2055

290.5

32.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.097 ± 0.037

0.709 ± 0.01

5.085 ± 0.032

7.342 ± 0.038

4.579 ± 0.029

6.691 ± 0.032

1.944 ± 0.017

8.193 ± 0.03

7.237 ± 0.033

9.867 ± 0.034

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.714 ± 0.017

4.765 ± 0.028

3.351 ± 0.02

3.553 ± 0.021

3.61 ± 0.025

6.337 ± 0.027

5.472 ± 0.027

6.725 ± 0.029

1.038 ± 0.012

3.692 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski