Candidatus Sodalis pierantonius str. SOPE

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Bruguierivoracaceae; Sodalis; Candidatus Sodalis pierantonius

Average proteome isoelectric point is 6.97

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2189 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W0HSG0|W0HSG0_9GAMM Ribosomal RNA large subunit methyltransferase J OS=Candidatus Sodalis pierantonius str. SOPE OX=2342 GN=yhiR PE=3 SV=1
MM1 pKa = 7.42SNVPTEE7 pKa = 4.39LKK9 pKa = 9.44YY10 pKa = 9.08TASHH14 pKa = 5.55EE15 pKa = 4.34WVLNEE20 pKa = 4.02GDD22 pKa = 3.48GVYY25 pKa = 10.52CVGITEE31 pKa = 4.61HH32 pKa = 6.39AQEE35 pKa = 4.67LLGDD39 pKa = 4.16MVFMDD44 pKa = 4.87LPEE47 pKa = 4.74VGASFSAGEE56 pKa = 4.12DD57 pKa = 3.55CAVAEE62 pKa = 4.4SVKK65 pKa = 10.54AASDD69 pKa = 3.51IYY71 pKa = 11.37APISGEE77 pKa = 3.64IVAVNDD83 pKa = 4.54DD84 pKa = 4.24LDD86 pKa = 4.14GSPEE90 pKa = 4.2LVNSAPYY97 pKa = 9.09TDD99 pKa = 3.43GWLFKK104 pKa = 10.39IKK106 pKa = 10.49SADD109 pKa = 3.39EE110 pKa = 4.51SEE112 pKa = 4.36VNEE115 pKa = 4.53LLDD118 pKa = 3.76AAAYY122 pKa = 8.65QAAIDD127 pKa = 4.45EE128 pKa = 4.4EE129 pKa = 5.26DD130 pKa = 3.47EE131 pKa = 4.2

Molecular weight: 13.99 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W0HMJ4|W0HMJ4_9GAMM ATP-dependent 6-phosphofructokinase OS=Candidatus Sodalis pierantonius str. SOPE OX=2342 GN=pfkA PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.68RR12 pKa = 11.84NRR14 pKa = 11.84THH16 pKa = 7.28GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.4NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.36GRR39 pKa = 11.84TRR41 pKa = 11.84LTVSSKK47 pKa = 11.13

Molecular weight: 5.51 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2189

0

2189

655530

34

1487

299.5

33.2

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.272 ± 0.056

1.108 ± 0.018

5.374 ± 0.041

5.461 ± 0.056

3.363 ± 0.037

7.232 ± 0.045

2.46 ± 0.026

5.473 ± 0.042

4.164 ± 0.047

11.202 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.736 ± 0.023

3.35 ± 0.033

4.498 ± 0.032

4.613 ± 0.041

6.771 ± 0.047

5.521 ± 0.032

5.228 ± 0.032

6.96 ± 0.038

1.437 ± 0.023

2.777 ± 0.028
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski