Opium poppy mosaic virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Tolucaviricetes; Tolivirales; Tombusviridae; Calvusvirinae; Umbravirus

Average proteome isoelectric point is 7.57

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|G0KUS6|G0KUS6_9TOMB Putative phloem RNA movement protein OS=Opium poppy mosaic virus OX=473784 PE=4 SV=2
MM1 pKa = 7.88DD2 pKa = 4.05FVDD5 pKa = 6.31RR6 pKa = 11.84ITRR9 pKa = 11.84WLSGDD14 pKa = 4.47FKK16 pKa = 10.69PSAYY20 pKa = 9.23IKK22 pKa = 10.56SRR24 pKa = 11.84NEE26 pKa = 3.56CVVAYY31 pKa = 10.15GEE33 pKa = 4.13EE34 pKa = 4.19WATLVTQSRR43 pKa = 11.84MQRR46 pKa = 11.84EE47 pKa = 4.24ASRR50 pKa = 11.84QYY52 pKa = 11.54ADD54 pKa = 3.56WYY56 pKa = 10.84NSASPTTCTMPPPTDD71 pKa = 3.32AEE73 pKa = 4.6LIEE76 pKa = 4.12EE77 pKa = 4.16ARR79 pKa = 11.84VGKK82 pKa = 10.39LKK84 pKa = 10.95AGLDD88 pKa = 3.65QPKK91 pKa = 9.49KK92 pKa = 7.79QQEE95 pKa = 3.95AASINLGGIKK105 pKa = 9.19TPPPMSEE112 pKa = 4.06EE113 pKa = 3.9QSTLLDD119 pKa = 3.84LEE121 pKa = 4.79ALPSYY126 pKa = 10.33DD127 pKa = 3.78QIVAVGKK134 pKa = 9.96LRR136 pKa = 11.84RR137 pKa = 11.84LQLQSACPQYY147 pKa = 10.68TDD149 pKa = 3.76EE150 pKa = 5.38EE151 pKa = 4.35RR152 pKa = 11.84ASWAIIPYY160 pKa = 8.74TGGPRR165 pKa = 11.84VIRR168 pKa = 11.84EE169 pKa = 4.14DD170 pKa = 3.49EE171 pKa = 4.22VLPRR175 pKa = 11.84APSVVLLNDD184 pKa = 3.83APRR187 pKa = 11.84SMSKK191 pKa = 9.62IEE193 pKa = 4.19EE194 pKa = 4.15LVKK197 pKa = 10.99ACFATIDD204 pKa = 4.36KK205 pKa = 9.0VAKK208 pKa = 8.0WRR210 pKa = 11.84KK211 pKa = 8.43VDD213 pKa = 4.02YY214 pKa = 10.8IDD216 pKa = 4.7FSSKK220 pKa = 10.46AAQTPPSKK228 pKa = 11.03YY229 pKa = 9.9KK230 pKa = 10.22LQEE233 pKa = 4.17PGEE236 pKa = 4.33VMKK239 pKa = 10.91GMNAQSVAMEE249 pKa = 3.93LRR251 pKa = 11.84CRR253 pKa = 11.84YY254 pKa = 8.86GVQPCTAANLQLGNRR269 pKa = 11.84VARR272 pKa = 11.84EE273 pKa = 3.55ILDD276 pKa = 3.83RR277 pKa = 11.84QCQATRR283 pKa = 11.84EE284 pKa = 3.87QVYY287 pKa = 10.04YY288 pKa = 10.02YY289 pKa = 11.0GHH291 pKa = 7.86LATTMWFQPTLVDD304 pKa = 3.84LALRR308 pKa = 11.84AGAKK312 pKa = 10.32DD313 pKa = 3.36FF314 pKa = 4.45

Molecular weight: 35.28 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|G0KUS7|G0KUS7_9TOMB Putative cell-to-cell movement protein OS=Opium poppy mosaic virus OX=473784 PE=4 SV=2
MM1 pKa = 7.73ASLPNVSSSSKK12 pKa = 10.75SRR14 pKa = 11.84MQGRR18 pKa = 11.84TTQRR22 pKa = 11.84AIRR25 pKa = 11.84RR26 pKa = 11.84GDD28 pKa = 3.32GQRR31 pKa = 11.84ARR33 pKa = 11.84RR34 pKa = 11.84NRR36 pKa = 11.84PGHH39 pKa = 5.95TDD41 pKa = 3.46PPPSRR46 pKa = 11.84AEE48 pKa = 3.72ACRR51 pKa = 11.84NPAPAPKK58 pKa = 10.42NPGKK62 pKa = 10.27NRR64 pKa = 11.84GSLEE68 pKa = 3.99EE69 pKa = 4.2TPHH72 pKa = 5.77HH73 pKa = 6.51KK74 pKa = 9.97KK75 pKa = 9.9HH76 pKa = 6.57RR77 pKa = 11.84GPVVPRR83 pKa = 11.84EE84 pKa = 4.25NRR86 pKa = 11.84GSVHH90 pKa = 4.96PTRR93 pKa = 11.84PRR95 pKa = 11.84RR96 pKa = 11.84RR97 pKa = 11.84RR98 pKa = 11.84RR99 pKa = 11.84RR100 pKa = 11.84GDD102 pKa = 3.08HH103 pKa = 5.57MGSRR107 pKa = 11.84QHH109 pKa = 6.22ATTPEE114 pKa = 4.17QCWGACVLSTEE125 pKa = 4.2RR126 pKa = 11.84RR127 pKa = 11.84AEE129 pKa = 3.82IDD131 pKa = 3.54GLLSPLLHH139 pKa = 6.16TALMQGWGDD148 pKa = 3.84PEE150 pKa = 4.09VLVYY154 pKa = 9.8SIRR157 pKa = 11.84VLRR160 pKa = 11.84GEE162 pKa = 3.8LRR164 pKa = 11.84QWRR167 pKa = 11.84KK168 pKa = 8.73PVQSLHH174 pKa = 6.07NVATEE179 pKa = 3.85DD180 pKa = 3.65RR181 pKa = 11.84GNSAQLSAPIATEE194 pKa = 4.07PPNMQAPSKK203 pKa = 8.99EE204 pKa = 3.9QPAVDD209 pKa = 4.76GSPKK213 pKa = 9.86ICNLGCNIDD222 pKa = 4.12KK223 pKa = 11.0VCGHH227 pKa = 7.29PKK229 pKa = 9.87PGEE232 pKa = 4.28GNSGSTTQAGNTWW245 pKa = 3.06

Molecular weight: 26.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4

0

4

1681

245

865

420.3

47.04

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.626 ± 0.457

2.32 ± 0.089

4.819 ± 0.75

6.068 ± 0.333

2.558 ± 0.638

6.246 ± 0.603

2.142 ± 0.483

4.521 ± 0.449

5.473 ± 0.558

8.15 ± 0.593

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.677 ± 0.25

3.629 ± 0.427

7.02 ± 0.905

4.521 ± 0.57

7.436 ± 0.885

6.425 ± 0.455

5.532 ± 0.134

6.901 ± 0.438

1.725 ± 0.219

3.212 ± 0.545
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski