Coriobacteriales bacterium OH1046

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; unclassified Coriobacteriales

Average proteome isoelectric point is 5.69

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2118 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A437UUM9|A0A437UUM9_9ACTN DNA topoisomerase 1 OS=Coriobacteriales bacterium OH1046 OX=2491116 GN=topA PE=3 SV=1
MM1 pKa = 7.14KK2 pKa = 10.2HH3 pKa = 6.14LRR5 pKa = 11.84TGIAACAVAVALAVGGCTGQADD27 pKa = 4.14EE28 pKa = 4.75TTSGTAEE35 pKa = 3.85QGTALDD41 pKa = 3.71QAGEE45 pKa = 4.38TEE47 pKa = 4.48RR48 pKa = 11.84SAEE51 pKa = 4.13EE52 pKa = 4.17PFSLTRR58 pKa = 11.84DD59 pKa = 3.44EE60 pKa = 5.11LVIDD64 pKa = 3.69EE65 pKa = 5.49TITDD69 pKa = 4.14DD70 pKa = 4.34ADD72 pKa = 3.36EE73 pKa = 4.25SHH75 pKa = 7.21AIIADD80 pKa = 3.7GTTEE84 pKa = 4.06SYY86 pKa = 11.02RR87 pKa = 11.84SIEE90 pKa = 4.11VVKK93 pKa = 10.2TGDD96 pKa = 3.57ADD98 pKa = 3.82GDD100 pKa = 3.94GADD103 pKa = 4.3FYY105 pKa = 10.88GTNAAVLATNGASLDD120 pKa = 3.9LADD123 pKa = 5.86SIVTSDD129 pKa = 3.4GTHH132 pKa = 6.29ANAVFSYY139 pKa = 11.54GEE141 pKa = 4.14GTVVNIAHH149 pKa = 6.8SIIEE153 pKa = 4.37TTGDD157 pKa = 3.4CSGGIMVTGGGTLNATDD174 pKa = 5.22LYY176 pKa = 11.54VHH178 pKa = 5.82TTGNSSAAIRR188 pKa = 11.84SDD190 pKa = 3.03RR191 pKa = 11.84GGGTEE196 pKa = 4.19NISGGTYY203 pKa = 8.13ITDD206 pKa = 5.21GIGSPVIYY214 pKa = 9.34STADD218 pKa = 3.21VTVSDD223 pKa = 4.1ATLEE227 pKa = 4.33STASQGVVVEE237 pKa = 4.74GKK239 pKa = 10.46NSVTLVDD246 pKa = 4.37CNLIASNTAKK256 pKa = 10.77NSDD259 pKa = 3.25KK260 pKa = 11.1SDD262 pKa = 2.84WYY264 pKa = 8.91QAVMIYY270 pKa = 10.81QSMSGDD276 pKa = 3.54AAEE279 pKa = 4.94GEE281 pKa = 4.47AFFTMEE287 pKa = 4.51GAASSIGTATFSSS300 pKa = 3.97

Molecular weight: 30.34 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A437UTP7|A0A437UTP7_9ACTN LacI family transcriptional regulator OS=Coriobacteriales bacterium OH1046 OX=2491116 GN=EII22_08715 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.42RR3 pKa = 11.84TYY5 pKa = 10.34QPNKK9 pKa = 8.62RR10 pKa = 11.84KK11 pKa = 9.56RR12 pKa = 11.84AKK14 pKa = 8.76THH16 pKa = 5.23GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.11GGRR28 pKa = 11.84AVLSRR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.11GRR39 pKa = 11.84KK40 pKa = 8.89SLTVV44 pKa = 3.12

Molecular weight: 5.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2118

0

2118

691650

33

2867

326.6

35.5

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.508 ± 0.068

1.61 ± 0.022

6.253 ± 0.04

6.5 ± 0.049

3.686 ± 0.031

8.676 ± 0.047

1.974 ± 0.024

5.859 ± 0.045

3.253 ± 0.037

9.576 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.714 ± 0.028

2.589 ± 0.03

4.293 ± 0.03

2.537 ± 0.022

6.387 ± 0.055

5.982 ± 0.044

5.093 ± 0.06

7.473 ± 0.038

1.087 ± 0.019

2.951 ± 0.033
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski