Corynebacterium tapiri

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium

Average proteome isoelectric point is 5.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2045 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A5C4U296|A0A5C4U296_9CORY Mak_N_cap domain-containing protein OS=Corynebacterium tapiri OX=1448266 GN=FHE74_10075 PE=4 SV=1
MM1 pKa = 7.31KK2 pKa = 10.46CEE4 pKa = 4.08PTVTLAVCCALALSGCSTLDD24 pKa = 3.58DD25 pKa = 4.04VPVPAEE31 pKa = 4.88DD32 pKa = 3.84GTPTASASAPDD43 pKa = 3.89SAPAPEE49 pKa = 3.99QAPALGADD57 pKa = 4.09LPVDD61 pKa = 3.76TRR63 pKa = 11.84PVGQRR68 pKa = 11.84TNFNEE73 pKa = 4.14CPYY76 pKa = 11.23LDD78 pKa = 4.21TQWVADD84 pKa = 3.89TNGQRR89 pKa = 11.84VTGVDD94 pKa = 2.72VDD96 pKa = 3.99TRR98 pKa = 11.84FDD100 pKa = 3.74PPACVYY106 pKa = 9.98FSYY109 pKa = 10.98PEE111 pKa = 4.17APQLEE116 pKa = 4.95VIVRR120 pKa = 11.84HH121 pKa = 5.68MPTEE125 pKa = 4.16ADD127 pKa = 3.71AIAVVDD133 pKa = 4.11TAAPISTTEE142 pKa = 4.33PADD145 pKa = 4.0QPAGWMGGRR154 pKa = 11.84AGEE157 pKa = 4.2GMVPGVEE164 pKa = 3.92GSVYY168 pKa = 10.55AVQKK172 pKa = 10.6GKK174 pKa = 8.22TAVVVYY180 pKa = 10.14SNQGQSFKK188 pKa = 10.56PEE190 pKa = 3.71QVAGQVINNLGLL202 pKa = 3.54

Molecular weight: 20.96 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A5C4U3X9|A0A5C4U3X9_9CORY Mannose-6-phosphate isomerase OS=Corynebacterium tapiri OX=1448266 GN=manA PE=3 SV=1
MM1 pKa = 7.69AKK3 pKa = 10.06GKK5 pKa = 8.69RR6 pKa = 11.84TFQPNNRR13 pKa = 11.84RR14 pKa = 11.84RR15 pKa = 11.84ARR17 pKa = 11.84KK18 pKa = 8.59HH19 pKa = 4.58GFRR22 pKa = 11.84TRR24 pKa = 11.84MRR26 pKa = 11.84TRR28 pKa = 11.84AGRR31 pKa = 11.84AIVSARR37 pKa = 11.84RR38 pKa = 11.84KK39 pKa = 9.63KK40 pKa = 10.53GRR42 pKa = 11.84ASLTAA47 pKa = 4.1

Molecular weight: 5.47 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2045

0

2045

685056

33

2986

335.0

36.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.905 ± 0.066

0.706 ± 0.016

5.908 ± 0.046

6.347 ± 0.054

3.237 ± 0.03

8.377 ± 0.045

2.268 ± 0.03

4.807 ± 0.037

2.982 ± 0.044

9.652 ± 0.058

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.134 ± 0.025

2.732 ± 0.033

5.106 ± 0.046

3.463 ± 0.027

6.357 ± 0.052

6.053 ± 0.038

5.988 ± 0.045

8.457 ± 0.048

1.338 ± 0.021

2.183 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski