Hubei partiti-like virus 11

Taxonomy: Viruses; Riboviria; unclassified Riboviria; unclassified RNA viruses ShiM-2016

Average proteome isoelectric point is 6.61

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1L3KLP6|A0A1L3KLP6_9VIRU RdRp OS=Hubei partiti-like virus 11 OX=1923017 PE=4 SV=1
MM1 pKa = 7.86EE2 pKa = 4.69YY3 pKa = 10.33LGKK6 pKa = 10.51AEE8 pKa = 4.47GFNMDD13 pKa = 4.36LRR15 pKa = 11.84PPRR18 pKa = 11.84MDD20 pKa = 5.92GITCGYY26 pKa = 8.48MNDD29 pKa = 3.84WFGDD33 pKa = 3.61AYY35 pKa = 11.26VDD37 pKa = 3.94VVMQTYY43 pKa = 9.99HH44 pKa = 7.24RR45 pKa = 11.84SQPSLEE51 pKa = 4.01LLKK54 pKa = 10.65EE55 pKa = 3.72DD56 pKa = 4.28FMRR59 pKa = 11.84YY60 pKa = 8.31DD61 pKa = 3.34RR62 pKa = 11.84KK63 pKa = 10.51YY64 pKa = 8.62VAGTVRR70 pKa = 11.84EE71 pKa = 4.08EE72 pKa = 3.48QSYY75 pKa = 11.03RR76 pKa = 11.84MVLQSVRR83 pKa = 11.84DD84 pKa = 3.67QFVLGEE90 pKa = 4.04KK91 pKa = 10.38LIPLTLGAVFEE102 pKa = 4.92SNSMTTDD109 pKa = 3.46KK110 pKa = 11.42SPGLPWIQRR119 pKa = 11.84GYY121 pKa = 8.11KK122 pKa = 9.04TKK124 pKa = 10.95GDD126 pKa = 3.35VFACHH131 pKa = 6.0EE132 pKa = 4.18ARR134 pKa = 11.84SEE136 pKa = 4.74IFRR139 pKa = 11.84TWDD142 pKa = 3.55RR143 pKa = 11.84IGNGRR148 pKa = 11.84GATLPDD154 pKa = 3.02TCAFMRR160 pKa = 11.84VQLAKK165 pKa = 10.3EE166 pKa = 4.22DD167 pKa = 3.75KK168 pKa = 10.22QKK170 pKa = 10.44IRR172 pKa = 11.84AVWGTPTDD180 pKa = 4.05VIAEE184 pKa = 4.22EE185 pKa = 4.29ARR187 pKa = 11.84FFLPYY192 pKa = 8.82MAKK195 pKa = 10.4LKK197 pKa = 11.05LSDD200 pKa = 3.67APIAYY205 pKa = 9.0RR206 pKa = 11.84AEE208 pKa = 4.08MATGGMSLINDD219 pKa = 4.21MCQSHH224 pKa = 7.36PGAKK228 pKa = 10.12YY229 pKa = 10.97LMTDD233 pKa = 3.74LSQFDD238 pKa = 3.79KK239 pKa = 11.16SVPPWLIRR247 pKa = 11.84DD248 pKa = 3.46AFGIVMEE255 pKa = 4.8NFDD258 pKa = 3.75FTRR261 pKa = 11.84VVGSDD266 pKa = 3.21GKK268 pKa = 10.97VWDD271 pKa = 4.15VNPDD275 pKa = 2.98RR276 pKa = 11.84TKK278 pKa = 10.91RR279 pKa = 11.84RR280 pKa = 11.84ISRR283 pKa = 11.84MIDD286 pKa = 3.12YY287 pKa = 9.08FINTPVRR294 pKa = 11.84LCNGEE299 pKa = 4.1RR300 pKa = 11.84YY301 pKa = 9.26RR302 pKa = 11.84KK303 pKa = 9.9RR304 pKa = 11.84GGVPSGSMWTNIVDD318 pKa = 4.49TIVNAIISRR327 pKa = 11.84YY328 pKa = 10.13CIFNTSGRR336 pKa = 11.84LPLADD341 pKa = 4.46MYY343 pKa = 11.55LGDD346 pKa = 4.22DD347 pKa = 3.36QFAVVDD353 pKa = 5.19GIINLNDD360 pKa = 3.02IAKK363 pKa = 10.4LMNEE367 pKa = 4.05SFGMVLHH374 pKa = 7.17PDD376 pKa = 2.87KK377 pKa = 11.07CVYY380 pKa = 9.44TEE382 pKa = 3.91NASNVQFLGYY392 pKa = 9.69FNRR395 pKa = 11.84NGLPWKK401 pKa = 10.88GNMFLVASMIFPEE414 pKa = 5.04RR415 pKa = 11.84PVNDD419 pKa = 2.61NMTRR423 pKa = 11.84VSRR426 pKa = 11.84AIGQMWSTLHH436 pKa = 6.64GGQAVRR442 pKa = 11.84WWNIVQAMLRR452 pKa = 11.84DD453 pKa = 4.0FGFTSKK459 pKa = 10.64EE460 pKa = 3.94VIEE463 pKa = 5.1NIQSRR468 pKa = 11.84PGSFRR473 pKa = 11.84YY474 pKa = 10.22LRR476 pKa = 11.84MLGIDD481 pKa = 3.18ISKK484 pKa = 10.22IGIPTRR490 pKa = 11.84YY491 pKa = 9.75GEE493 pKa = 4.63YY494 pKa = 10.0ILGIDD499 pKa = 4.66PPWKK503 pKa = 9.62SLKK506 pKa = 10.27SYY508 pKa = 10.95RR509 pKa = 11.84PVKK512 pKa = 9.97WDD514 pKa = 3.18IDD516 pKa = 3.8DD517 pKa = 4.28LDD519 pKa = 4.45RR520 pKa = 11.84RR521 pKa = 11.84SQSIDD526 pKa = 2.99MEE528 pKa = 4.13EE529 pKa = 3.46WHH531 pKa = 6.98NFIQCMDD538 pKa = 4.49DD539 pKa = 4.37SDD541 pKa = 5.99DD542 pKa = 3.73EE543 pKa = 4.4

Molecular weight: 62.4 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1L3KLP6|A0A1L3KLP6_9VIRU RdRp OS=Hubei partiti-like virus 11 OX=1923017 PE=4 SV=1
MM1 pKa = 6.84MSEE4 pKa = 4.29RR5 pKa = 11.84SHH7 pKa = 7.23LNLKK11 pKa = 9.64MNTDD15 pKa = 3.75KK16 pKa = 10.4KK17 pKa = 9.18TKK19 pKa = 10.41SKK21 pKa = 10.91GPKK24 pKa = 8.39KK25 pKa = 8.56TSKK28 pKa = 10.33PKK30 pKa = 9.97EE31 pKa = 4.15EE32 pKa = 4.15KK33 pKa = 10.27KK34 pKa = 10.83EE35 pKa = 3.97PVDD38 pKa = 3.73APSVKK43 pKa = 10.41VEE45 pKa = 3.95VEE47 pKa = 3.95KK48 pKa = 10.81PKK50 pKa = 10.05PAEE53 pKa = 3.87VTKK56 pKa = 9.92PAEE59 pKa = 4.18PVKK62 pKa = 9.37PTPAPQKK69 pKa = 10.21SKK71 pKa = 10.88PKK73 pKa = 9.97AQSQVASKK81 pKa = 10.27LQNDD85 pKa = 4.58PLWEE89 pKa = 4.57DD90 pKa = 3.89FGSDD94 pKa = 3.91DD95 pKa = 5.06FDD97 pKa = 3.93VLMPEE102 pKa = 4.19RR103 pKa = 11.84GDD105 pKa = 3.2NRR107 pKa = 11.84FAVTLEE113 pKa = 4.15GYY115 pKa = 9.98IPLIEE120 pKa = 4.1QTYY123 pKa = 7.64EE124 pKa = 4.1TLSHH128 pKa = 6.56EE129 pKa = 4.86DD130 pKa = 3.16KK131 pKa = 11.07TFGKK135 pKa = 10.58SMSLSMFSWYY145 pKa = 10.02CCQHH149 pKa = 7.34LYY151 pKa = 9.81MRR153 pKa = 11.84IITIRR158 pKa = 11.84MSEE161 pKa = 4.09GLATSDD167 pKa = 3.16EE168 pKa = 4.07KK169 pKa = 11.21RR170 pKa = 11.84YY171 pKa = 9.14VAEE174 pKa = 3.98VSSIPFVIPLTIEE187 pKa = 4.07IYY189 pKa = 10.57LKK191 pKa = 10.9SIGNVMDD198 pKa = 4.91AEE200 pKa = 4.37LNKK203 pKa = 10.78LKK205 pKa = 10.44ISFPAFPNAEE215 pKa = 3.84GHH217 pKa = 6.62FGVVNNNSHH226 pKa = 5.89WKK228 pKa = 9.17YY229 pKa = 10.08EE230 pKa = 4.44SVPAPYY236 pKa = 8.71VTSRR240 pKa = 11.84RR241 pKa = 11.84MIHH244 pKa = 7.12DD245 pKa = 3.58YY246 pKa = 10.97AYY248 pKa = 7.37TTGLEE253 pKa = 4.0NDD255 pKa = 5.04RR256 pKa = 11.84IWTLPLNLLPPNRR269 pKa = 11.84DD270 pKa = 3.0ATRR273 pKa = 11.84HH274 pKa = 6.06RR275 pKa = 11.84ICGNPTKK282 pKa = 10.81NLLGWARR289 pKa = 11.84SSMLTSEE296 pKa = 3.87QTLILEE302 pKa = 4.39SCGIDD307 pKa = 3.3GANFPTEE314 pKa = 3.46RR315 pKa = 11.84PMFQFNRR322 pKa = 11.84GLFVLLSSHH331 pKa = 6.87LSAASRR337 pKa = 11.84SMKK340 pKa = 9.88MSGSAITSIEE350 pKa = 3.92GSFGQTLFVEE360 pKa = 4.67RR361 pKa = 11.84DD362 pKa = 3.28DD363 pKa = 3.94RR364 pKa = 11.84HH365 pKa = 6.58PEE367 pKa = 3.7EE368 pKa = 4.46FDD370 pKa = 4.87RR371 pKa = 11.84NVQYY375 pKa = 11.36CEE377 pKa = 3.88MGNLCTVSAFQVDD390 pKa = 3.36KK391 pKa = 11.06RR392 pKa = 11.84FSQGAAVCNFRR403 pKa = 11.84SRR405 pKa = 11.84KK406 pKa = 9.6FEE408 pKa = 4.22INNLRR413 pKa = 11.84SYY415 pKa = 11.6ACFDD419 pKa = 3.71FGDD422 pKa = 4.3YY423 pKa = 10.96EE424 pKa = 4.28HH425 pKa = 7.73VPDD428 pKa = 4.06GWNNTVNTIFDD439 pKa = 4.36FGAQADD445 pKa = 3.77WNRR448 pKa = 11.84PKK450 pKa = 9.86FTSAYY455 pKa = 7.93GSKK458 pKa = 10.31VALRR462 pKa = 11.84QSWVKK467 pKa = 10.56KK468 pKa = 10.24SLVRR472 pKa = 11.84DD473 pKa = 3.56KK474 pKa = 10.99TT475 pKa = 3.62

Molecular weight: 53.9 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

1018

475

543

509.0

58.15

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.501 ± 0.256

1.572 ± 0.073

6.778 ± 0.986

5.599 ± 0.74

5.01 ± 0.165

6.385 ± 0.867

1.572 ± 0.347

5.501 ± 0.84

5.992 ± 1.032

6.974 ± 0.119

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

4.224 ± 0.694

5.01 ± 0.302

5.501 ± 0.53

3.143 ± 0.128

6.68 ± 0.785

7.564 ± 1.106

5.206 ± 0.448

6.189 ± 0.191

2.161 ± 0.31

3.438 ± 0.319
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski