Oita virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Alpharhabdovirinae; Ledantevirus; Oita ledantevirus

Average proteome isoelectric point is 6.21

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0D3R163|A0A0D3R163_9RHAB Nucleocapsid protein OS=Oita virus OX=1272953 PE=4 SV=1
MM1 pKa = 7.35NSDD4 pKa = 3.24RR5 pKa = 11.84AKK7 pKa = 10.03IQRR10 pKa = 11.84LAKK13 pKa = 9.91ALPWEE18 pKa = 4.04NVKK21 pKa = 10.6INIEE25 pKa = 4.38DD26 pKa = 3.76IEE28 pKa = 4.59DD29 pKa = 3.71SEE31 pKa = 5.02EE32 pKa = 4.39EE33 pKa = 3.81IDD35 pKa = 3.54QKK37 pKa = 11.16IIVTEE42 pKa = 3.98EE43 pKa = 3.98RR44 pKa = 11.84DD45 pKa = 4.17LEE47 pKa = 4.34WTEE50 pKa = 4.16NPIKK54 pKa = 10.53EE55 pKa = 4.13QVEE58 pKa = 3.86PFEE61 pKa = 4.22IQEE64 pKa = 4.16EE65 pKa = 4.52DD66 pKa = 3.53STPTEE71 pKa = 4.31MGLSACEE78 pKa = 3.9KK79 pKa = 9.56EE80 pKa = 4.22KK81 pKa = 11.09EE82 pKa = 4.11KK83 pKa = 11.16EE84 pKa = 4.14KK85 pKa = 11.28EE86 pKa = 3.58KK87 pKa = 10.67DD88 pKa = 3.01TAEE91 pKa = 3.99NKK93 pKa = 10.46GIEE96 pKa = 4.37GSGQGCSKK104 pKa = 10.13RR105 pKa = 11.84SKK107 pKa = 9.98RR108 pKa = 11.84GKK110 pKa = 10.05GEE112 pKa = 3.6QRR114 pKa = 11.84GKK116 pKa = 10.47NKK118 pKa = 10.26SEE120 pKa = 4.0EE121 pKa = 3.99TSAPSDD127 pKa = 3.28SATITNPDD135 pKa = 3.07IKK137 pKa = 10.39EE138 pKa = 4.32DD139 pKa = 3.95PVCALSVEE147 pKa = 4.52EE148 pKa = 3.98DD149 pKa = 3.58ALWRR153 pKa = 11.84EE154 pKa = 4.59EE155 pKa = 3.82KK156 pKa = 10.47RR157 pKa = 11.84KK158 pKa = 9.46EE159 pKa = 3.96ALRR162 pKa = 11.84LQSDD166 pKa = 4.87AIRR169 pKa = 11.84VEE171 pKa = 3.77RR172 pKa = 11.84VNYY175 pKa = 10.57NEE177 pKa = 4.98IKK179 pKa = 9.01TQEE182 pKa = 4.31DD183 pKa = 4.02LDD185 pKa = 4.24DD186 pKa = 5.45LMTEE190 pKa = 4.36VIYY193 pKa = 10.72KK194 pKa = 10.16VLEE197 pKa = 4.12CTGYY201 pKa = 10.44CARR204 pKa = 11.84SDD206 pKa = 3.53LTSIRR211 pKa = 11.84RR212 pKa = 11.84DD213 pKa = 3.92DD214 pKa = 3.1IRR216 pKa = 11.84VYY218 pKa = 10.76YY219 pKa = 10.37KK220 pKa = 10.62EE221 pKa = 4.55SFVKK225 pKa = 9.91EE226 pKa = 4.07AEE228 pKa = 4.24RR229 pKa = 11.84QTEE232 pKa = 4.06EE233 pKa = 3.4WKK235 pKa = 10.68KK236 pKa = 10.64RR237 pKa = 11.84LEE239 pKa = 4.0EE240 pKa = 4.29EE241 pKa = 4.95IKK243 pKa = 11.07DD244 pKa = 3.82KK245 pKa = 10.59TCKK248 pKa = 10.49DD249 pKa = 3.75NLCDD253 pKa = 4.01PDD255 pKa = 4.14SKK257 pKa = 11.1RR258 pKa = 11.84EE259 pKa = 3.92EE260 pKa = 3.98NKK262 pKa = 10.69ANPKK266 pKa = 9.63DD267 pKa = 3.82QSSSSIKK274 pKa = 9.79EE275 pKa = 3.53RR276 pKa = 11.84HH277 pKa = 4.8QPQIEE282 pKa = 4.54STDD285 pKa = 3.39EE286 pKa = 3.92PNPRR290 pKa = 11.84KK291 pKa = 9.49EE292 pKa = 4.08DD293 pKa = 3.45RR294 pKa = 11.84SDD296 pKa = 3.37NAEE299 pKa = 4.44DD300 pKa = 3.34STAIQMQLEE309 pKa = 4.3TLLQEE314 pKa = 4.54GMCFRR319 pKa = 11.84KK320 pKa = 10.0KK321 pKa = 10.07RR322 pKa = 11.84GGYY325 pKa = 6.59MTVSHH330 pKa = 7.62DD331 pKa = 3.64NPKK334 pKa = 10.61LKK336 pKa = 10.49NIKK339 pKa = 9.93LKK341 pKa = 10.71EE342 pKa = 3.89IALSSGSVKK351 pKa = 9.62EE352 pKa = 4.33AKK354 pKa = 9.91ILLLKK359 pKa = 10.6KK360 pKa = 10.26AGLYY364 pKa = 10.0QGIKK368 pKa = 9.3LLCYY372 pKa = 9.89IDD374 pKa = 3.71

Molecular weight: 43.08 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0D3R1Q4|A0A0D3R1Q4_9RHAB Matrix OS=Oita virus OX=1272953 PE=4 SV=1
MM1 pKa = 7.47LSVFKK6 pKa = 10.59KK7 pKa = 9.77SKK9 pKa = 9.68KK10 pKa = 10.05DD11 pKa = 3.5RR12 pKa = 11.84VSSSAPDD19 pKa = 3.32TSQLVKK25 pKa = 9.71EE26 pKa = 4.74TFFSVPSAPAPSIKK40 pKa = 9.96KK41 pKa = 10.42DD42 pKa = 3.16IFTHH46 pKa = 4.89TLRR49 pKa = 11.84VQAWIEE55 pKa = 3.8IRR57 pKa = 11.84SEE59 pKa = 3.77EE60 pKa = 4.29SIQDD64 pKa = 3.65FEE66 pKa = 5.19DD67 pKa = 3.48CTKK70 pKa = 10.45ILEE73 pKa = 4.14PWIDD77 pKa = 3.74EE78 pKa = 4.17ASCPIWQYY86 pKa = 11.3IIDD89 pKa = 3.8SWVFFCMGVHH99 pKa = 6.26ARR101 pKa = 11.84KK102 pKa = 10.13DD103 pKa = 3.77PLCTTHH109 pKa = 6.75CLYY112 pKa = 10.51RR113 pKa = 11.84ARR115 pKa = 11.84IDD117 pKa = 3.3QVLEE121 pKa = 4.33FKK123 pKa = 11.21HH124 pKa = 6.2NVEE127 pKa = 4.35EE128 pKa = 5.44LDD130 pKa = 3.69PALCKK135 pKa = 10.38AVTVRR140 pKa = 11.84FVTAYY145 pKa = 10.17NGKK148 pKa = 9.02KK149 pKa = 10.14CEE151 pKa = 3.88VSFWSSMTPSRR162 pKa = 11.84RR163 pKa = 11.84RR164 pKa = 11.84GAPFFIMYY172 pKa = 7.5YY173 pKa = 10.87APLKK177 pKa = 10.76DD178 pKa = 4.3GNPPPAMMKK187 pKa = 9.99WKK189 pKa = 10.27INLPFKK195 pKa = 10.5ILNDD199 pKa = 4.0TEE201 pKa = 4.06EE202 pKa = 4.6GPYY205 pKa = 10.27LSKK208 pKa = 11.23

Molecular weight: 24.01 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

3682

208

2119

736.4

84.26

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.726 ± 0.83

2.146 ± 0.23

5.703 ± 0.397

7.74 ± 1.503

4.047 ± 0.61

6.165 ± 0.796

2.499 ± 0.47

7.17 ± 0.596

7.251 ± 1.04

9.533 ± 1.103

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.146 ± 0.152

4.59 ± 0.454

4.237 ± 0.419

3.069 ± 0.331

5.731 ± 0.398

7.414 ± 0.291

4.916 ± 0.395

5.595 ± 0.537

2.01 ± 0.182

3.313 ± 0.262
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski