Xenorhabdus bovienii (strain SS-2004)

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Enterobacterales; Morganellaceae; Xenorhabdus; Xenorhabdus bovienii

Average proteome isoelectric point is 6.77

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4102 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|D3UXU7|D3UXU7_XENBS Transposase OS=Xenorhabdus bovienii (strain SS-2004) OX=406818 GN=XBJ1_1339 PE=4 SV=1
MM1 pKa = 7.63KK2 pKa = 10.51LHH4 pKa = 7.01FSTDD8 pKa = 3.18NAEE11 pKa = 4.21LPEE14 pKa = 4.52CVLSGDD20 pKa = 5.33DD21 pKa = 3.75MQQMGFMPNTLFHH34 pKa = 6.25IQQYY38 pKa = 11.16NNGLMLTLAEE48 pKa = 4.76PDD50 pKa = 4.29VIPLSHH56 pKa = 6.35TAEE59 pKa = 4.05NDD61 pKa = 3.42PYY63 pKa = 11.28QGIDD67 pKa = 2.95WVRR70 pKa = 11.84DD71 pKa = 3.4NGEE74 pKa = 4.42LYY76 pKa = 10.94LAGDD80 pKa = 4.1WLTEE84 pKa = 3.97TGLLDD89 pKa = 4.2NPVQVAFGYY98 pKa = 10.23GKK100 pKa = 10.25IMLMTEE106 pKa = 3.82SDD108 pKa = 5.07LIPVV112 pKa = 4.08

Molecular weight: 12.56 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|D3V7A4|D3V7A4_XENBS Response regulator in two-component regulatory system with NarQ (Or NarX) regulates anaerobic respiratory gene expression OS=Xenorhabdus bovienii (strain SS-2004) OX=406818 GN=narP PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.51RR3 pKa = 11.84TFQPSVLKK11 pKa = 10.68RR12 pKa = 11.84NRR14 pKa = 11.84THH16 pKa = 7.1GFRR19 pKa = 11.84SRR21 pKa = 11.84MATKK25 pKa = 10.48NGRR28 pKa = 11.84QVLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.36GRR39 pKa = 11.84TRR41 pKa = 11.84LTVSKK46 pKa = 10.95

Molecular weight: 5.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4102

0

4102

1169299

20

9647

285.1

31.85

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.225 ± 0.051

1.089 ± 0.015

5.21 ± 0.034

5.942 ± 0.033

3.958 ± 0.027

6.864 ± 0.044

2.399 ± 0.022

6.721 ± 0.041

5.093 ± 0.058

10.596 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.586 ± 0.027

4.346 ± 0.037

4.265 ± 0.042

4.703 ± 0.041

5.315 ± 0.032

6.354 ± 0.038

5.397 ± 0.031

6.407 ± 0.031

1.367 ± 0.016

3.163 ± 0.023
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski