Acinetobacter phage AB1

Taxonomy: Viruses; Duplodnaviria; Heunggongvirae; Uroviricota; Caudoviricetes; Caudovirales; Myoviridae; Obolenskvirus; Acinetobacter virus AB1

Average proteome isoelectric point is 6.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 85 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|E2GM03|E2GM03_9CAUD AB1gp65 OS=Acinetobacter phage AB1 OX=889876 GN=AB1-65 PE=4 SV=1
MM1 pKa = 7.44KK2 pKa = 10.23NALILASSVALAACSGKK19 pKa = 9.62PVITGPYY26 pKa = 8.41EE27 pKa = 4.1VEE29 pKa = 4.22SLDD32 pKa = 3.67MEE34 pKa = 5.01HH35 pKa = 6.49NVAAIKK41 pKa = 10.92SGDD44 pKa = 3.47LVLEE48 pKa = 4.32VEE50 pKa = 4.35FEE52 pKa = 4.21GRR54 pKa = 11.84FFKK57 pKa = 11.12DD58 pKa = 2.6GDD60 pKa = 4.21GFQSWNDD67 pKa = 3.43VEE69 pKa = 4.54IKK71 pKa = 10.46SVSDD75 pKa = 3.14VKK77 pKa = 11.24VYY79 pKa = 11.17NEE81 pKa = 4.27DD82 pKa = 4.01GEE84 pKa = 4.64TEE86 pKa = 4.86DD87 pKa = 3.85YY88 pKa = 11.0VLPSEE93 pKa = 4.24EE94 pKa = 3.83VSNIVQVIEE103 pKa = 4.04NEE105 pKa = 3.82IAEE108 pKa = 4.25NMM110 pKa = 3.84

Molecular weight: 12.06 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|E2GLZ4|E2GLZ4_9CAUD AB1gp56 OS=Acinetobacter phage AB1 OX=889876 GN=AB1-56 PE=4 SV=1
MM1 pKa = 7.62SKK3 pKa = 10.18PATSFLFLGEE13 pKa = 4.57LKK15 pKa = 10.3PLEE18 pKa = 4.18STVIEE23 pKa = 3.99NTKK26 pKa = 8.36RR27 pKa = 11.84TKK29 pKa = 10.5VRR31 pKa = 11.84DD32 pKa = 3.78AIRR35 pKa = 11.84RR36 pKa = 11.84YY37 pKa = 10.37GDD39 pKa = 3.17RR40 pKa = 11.84KK41 pKa = 10.6FNTTQVGNNVIVTRR55 pKa = 11.84IQQ57 pKa = 2.88

Molecular weight: 6.54 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

85

0

85

13582

37

763

159.8

17.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.995 ± 0.322

1.156 ± 0.119

6.398 ± 0.257

6.568 ± 0.395

4.477 ± 0.26

6.774 ± 0.282

1.576 ± 0.164

7.193 ± 0.305

7.606 ± 0.47

7.797 ± 0.269

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.776 ± 0.19

5.971 ± 0.318

3.151 ± 0.19

3.991 ± 0.238

3.659 ± 0.198

6.582 ± 0.26

5.228 ± 0.41

6.752 ± 0.25

1.406 ± 0.103

3.946 ± 0.174
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski