Maize yellow striate virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Negarnaviricota; Haploviricotina; Monjiviricetes; Mononegavirales; Rhabdoviridae; Betarhabdovirinae; Cytorhabdovirus; Maize yellow striate cytorhabdovirus

Average proteome isoelectric point is 6.82

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 10 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2D1GTQ4|A0A2D1GTQ4_9RHAB N protein OS=Maize yellow striate virus OX=1168550 GN=N PE=4 SV=1
MM1 pKa = 7.65ASSSDD6 pKa = 3.51VQFLSGIPDD15 pKa = 4.94DD16 pKa = 3.75IHH18 pKa = 6.42PRR20 pKa = 11.84SYY22 pKa = 11.28DD23 pKa = 3.39LSADD27 pKa = 4.05GIFSNAEE34 pKa = 3.64EE35 pKa = 4.34EE36 pKa = 4.36EE37 pKa = 4.38VMEE40 pKa = 4.31EE41 pKa = 3.97RR42 pKa = 11.84QAEE45 pKa = 4.0QDD47 pKa = 3.52LPDD50 pKa = 4.5IEE52 pKa = 4.88EE53 pKa = 4.31EE54 pKa = 4.22EE55 pKa = 4.29PLVEE59 pKa = 5.18KK60 pKa = 9.77PAKK63 pKa = 10.07GEE65 pKa = 4.1KK66 pKa = 9.59FVSGTDD72 pKa = 3.45EE73 pKa = 4.18LVSILKK79 pKa = 10.31DD80 pKa = 3.3YY81 pKa = 11.34SNRR84 pKa = 11.84KK85 pKa = 8.06GMGMKK90 pKa = 10.13KK91 pKa = 9.4EE92 pKa = 4.06WVNIMKK98 pKa = 10.28RR99 pKa = 11.84RR100 pKa = 11.84FHH102 pKa = 6.65EE103 pKa = 4.15MGGKK107 pKa = 7.9MLKK110 pKa = 8.1THH112 pKa = 6.44VDD114 pKa = 4.21FFLLGIQAEE123 pKa = 4.55RR124 pKa = 11.84NMSVDD129 pKa = 3.9RR130 pKa = 11.84DD131 pKa = 4.06FKK133 pKa = 10.98DD134 pKa = 2.87TATRR138 pKa = 11.84LSDD141 pKa = 3.23EE142 pKa = 4.45VNRR145 pKa = 11.84VSGVGKK151 pKa = 10.61RR152 pKa = 11.84MLDD155 pKa = 3.23AQQKK159 pKa = 7.36MEE161 pKa = 4.68RR162 pKa = 11.84EE163 pKa = 4.3MEE165 pKa = 4.13QKK167 pKa = 9.57MKK169 pKa = 10.57EE170 pKa = 3.82ITAHH174 pKa = 5.34CKK176 pKa = 9.73KK177 pKa = 9.87MEE179 pKa = 4.01MMVAKK184 pKa = 10.77VEE186 pKa = 4.33TAVEE190 pKa = 4.08NASRR194 pKa = 11.84PSSISSWAMGGPSRR208 pKa = 11.84EE209 pKa = 4.09EE210 pKa = 3.86EE211 pKa = 4.04EE212 pKa = 4.0EE213 pKa = 3.83RR214 pKa = 11.84DD215 pKa = 3.48YY216 pKa = 11.87DD217 pKa = 4.48KK218 pKa = 10.87FLSMIGFEE226 pKa = 4.53DD227 pKa = 3.54KK228 pKa = 10.58HH229 pKa = 7.47IKK231 pKa = 8.91SATMKK236 pKa = 9.74KK237 pKa = 9.66CYY239 pKa = 9.24PAISDD244 pKa = 3.27EE245 pKa = 4.57MYY247 pKa = 9.56VHH249 pKa = 7.0VITGEE254 pKa = 3.88ADD256 pKa = 3.13HH257 pKa = 8.04ADD259 pKa = 3.16MTNYY263 pKa = 9.71YY264 pKa = 9.8RR265 pKa = 11.84LIMEE269 pKa = 4.22YY270 pKa = 10.94AEE272 pKa = 4.29SKK274 pKa = 9.9VLKK277 pKa = 9.21KK278 pKa = 10.69KK279 pKa = 10.58SVAASRR285 pKa = 11.84NDD287 pKa = 3.75PYY289 pKa = 11.06PGLL292 pKa = 3.99

Molecular weight: 33.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2D1GTP8|A0A2D1GTP8_9RHAB P protein OS=Maize yellow striate virus OX=1168550 GN=P PE=4 SV=1
MM1 pKa = 7.7WNFLLHH7 pKa = 5.32VLRR10 pKa = 11.84DD11 pKa = 3.62GSDD14 pKa = 3.36RR15 pKa = 11.84TNMSSSWTVVSLSAYY30 pKa = 9.72AILVFIISISICRR43 pKa = 11.84LKK45 pKa = 10.79VYY47 pKa = 7.94QLRR50 pKa = 11.84LIVIISLCHH59 pKa = 5.6LVSAIGSAFKK69 pKa = 10.5EE70 pKa = 4.34WTT72 pKa = 3.41

Molecular weight: 8.19 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

10

0

10

3954

51

2056

395.4

44.99

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.982 ± 0.645

1.669 ± 0.477

5.387 ± 0.42

6.5 ± 0.703

3.92 ± 0.249

5.589 ± 0.359

2.15 ± 0.313

7.031 ± 0.49

6.651 ± 0.529

9.611 ± 1.026

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.288 ± 0.497

4.401 ± 0.367

4.299 ± 0.44

2.731 ± 0.314

5.438 ± 0.327

8.574 ± 0.596

5.918 ± 0.694

6.348 ± 0.451

1.593 ± 0.285

3.92 ± 0.422
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski