Acidaminococcus sp. CAG:917

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Firmicutes; Negativicutes; Acidaminococcales; Acidaminococcaceae; Acidaminococcus; environmental samples

Average proteome isoelectric point is 6.35

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1276 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|R7K8C2|R7K8C2_9FIRM Uncharacterized protein OS=Acidaminococcus sp. CAG:917 OX=1262688 GN=BN810_00857 PE=4 SV=1
MM1 pKa = 7.54TNNNDD6 pKa = 3.43DD7 pKa = 3.61EE8 pKa = 5.56KK9 pKa = 11.05EE10 pKa = 4.13FKK12 pKa = 10.42EE13 pKa = 4.31LSLKK17 pKa = 10.29EE18 pKa = 4.06KK19 pKa = 10.51QNLVALVASSDD30 pKa = 3.15ADD32 pKa = 3.51YY33 pKa = 11.33DD34 pKa = 4.03KK35 pKa = 11.34KK36 pKa = 11.31LEE38 pKa = 4.31AYY40 pKa = 9.9AYY42 pKa = 9.49LCEE45 pKa = 4.37NGEE48 pKa = 4.26EE49 pKa = 4.43VVDD52 pKa = 5.5DD53 pKa = 4.4MIKK56 pKa = 10.68AQLTADD62 pKa = 3.93EE63 pKa = 5.16EE64 pKa = 4.64SGQMLVEE71 pKa = 3.91ILANYY76 pKa = 9.51KK77 pKa = 9.8GRR79 pKa = 11.84KK80 pKa = 9.45DD81 pKa = 3.21IFLLLVSYY89 pKa = 8.09FYY91 pKa = 10.72RR92 pKa = 11.84GEE94 pKa = 4.08DD95 pKa = 3.14VALFARR101 pKa = 11.84LLGSYY106 pKa = 10.25GDD108 pKa = 3.87EE109 pKa = 3.94AAIDD113 pKa = 3.68ILKK116 pKa = 10.73SFAKK120 pKa = 10.29QFEE123 pKa = 4.45DD124 pKa = 3.28EE125 pKa = 4.28LNYY128 pKa = 11.02NEE130 pKa = 4.96FMEE133 pKa = 4.25IRR135 pKa = 11.84NAVEE139 pKa = 3.67EE140 pKa = 4.3LGGDD144 pKa = 3.61FDD146 pKa = 6.91LNTDD150 pKa = 4.47FSNDD154 pKa = 2.68PFYY157 pKa = 11.02RR158 pKa = 11.84YY159 pKa = 10.16LKK161 pKa = 10.2GLDD164 pKa = 3.5MSDD167 pKa = 3.77LPEE170 pKa = 5.98DD171 pKa = 4.07EE172 pKa = 6.42SDD174 pKa = 4.21DD175 pKa = 4.24CDD177 pKa = 5.7CEE179 pKa = 4.37EE180 pKa = 5.42CDD182 pKa = 5.21GNCEE186 pKa = 5.04DD187 pKa = 6.03DD188 pKa = 4.45CDD190 pKa = 5.02CDD192 pKa = 3.71GHH194 pKa = 7.31DD195 pKa = 4.2GHH197 pKa = 7.69CHH199 pKa = 7.06DD200 pKa = 5.34EE201 pKa = 4.04NCGCHH206 pKa = 4.75GHH208 pKa = 6.64KK209 pKa = 10.32KK210 pKa = 10.13

Molecular weight: 23.87 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|R7K9M1|R7K9M1_9FIRM Uncharacterized protein OS=Acidaminococcus sp. CAG:917 OX=1262688 GN=BN810_00041 PE=4 SV=1
MM1 pKa = 7.52GKK3 pKa = 9.83GAKK6 pKa = 9.09KK7 pKa = 10.41DD8 pKa = 3.6YY9 pKa = 10.36FGLGRR14 pKa = 11.84IVSIILAIIPVTAWLLGAITRR35 pKa = 11.84IMDD38 pKa = 3.94GGLGIVFGIIRR49 pKa = 11.84LIGGGFILWIIDD61 pKa = 4.77LILMIVRR68 pKa = 11.84GSILRR73 pKa = 11.84IAA75 pKa = 4.19

Molecular weight: 8.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1276

0

1276

414890

30

6614

325.1

36.23

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.504 ± 0.07

1.557 ± 0.039

6.116 ± 0.059

6.96 ± 0.068

4.683 ± 0.045

6.864 ± 0.06

1.285 ± 0.03

7.408 ± 0.053

8.415 ± 0.107

8.819 ± 0.071

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.446 ± 0.037

4.724 ± 0.062

3.082 ± 0.039

2.439 ± 0.03

3.557 ± 0.061

6.606 ± 0.069

5.439 ± 0.089

7.368 ± 0.054

0.627 ± 0.021

4.09 ± 0.079
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski