Flavisolibacter ginsengisoli DSM 18119

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Chitinophagia; Chitinophagales; Chitinophagaceae; Flavisolibacter; Flavisolibacter ginsengisoli

Average proteome isoelectric point is 6.94

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4178 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5CRL0|A0A1M5CRL0_9BACT ATP synthase subunit beta OS=Flavisolibacter ginsengisoli DSM 18119 OX=1121884 GN=atpD PE=3 SV=1
MM1 pKa = 8.11DD2 pKa = 4.95SLHH5 pKa = 6.45NVIDD9 pKa = 4.03PEE11 pKa = 5.08IGLNIVDD18 pKa = 5.22LGLIYY23 pKa = 10.54QVDD26 pKa = 4.26FDD28 pKa = 6.55DD29 pKa = 4.19DD30 pKa = 4.05TKK32 pKa = 10.84TCFVSMTLTTQFCPMGEE49 pKa = 4.35SIRR52 pKa = 11.84DD53 pKa = 3.58NVVNALEE60 pKa = 4.11QAFPGYY66 pKa = 10.35AINVDD71 pKa = 4.25LVFDD75 pKa = 4.9PPWSTEE81 pKa = 3.83KK82 pKa = 10.82VSEE85 pKa = 4.44QGLKK89 pKa = 10.04YY90 pKa = 10.95LNGEE94 pKa = 4.07

Molecular weight: 10.5 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5BYY4|A0A1M5BYY4_9BACT Hemerythrin HHE cation binding domain-containing protein OS=Flavisolibacter ginsengisoli DSM 18119 OX=1121884 GN=SAMN02745131_02741 PE=4 SV=1
MM1 pKa = 6.69VAKK4 pKa = 8.98VHH6 pKa = 6.23PLGLSRR12 pKa = 11.84RR13 pKa = 11.84MKK15 pKa = 10.41GSFRR19 pKa = 11.84GTRR22 pKa = 11.84NLWIVDD28 pKa = 3.35GVARR32 pKa = 11.84VLWIKK37 pKa = 10.15VQAFAIKK44 pKa = 10.61NCVLWNDD51 pKa = 3.55CLRR54 pKa = 11.84WFTTYY59 pKa = 10.48YY60 pKa = 10.42FCLPSASHH68 pKa = 6.82FLLMPKK74 pKa = 10.13RR75 pKa = 11.84KK76 pKa = 9.56

Molecular weight: 8.94 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4178

0

4178

1362833

36

2514

326.2

36.64

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.045 ± 0.033

0.885 ± 0.012

5.123 ± 0.027

5.734 ± 0.039

4.956 ± 0.03

6.884 ± 0.038

1.987 ± 0.015

7.268 ± 0.033

6.938 ± 0.037

9.423 ± 0.041

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.409 ± 0.018

5.533 ± 0.031

3.939 ± 0.024

3.815 ± 0.026

4.035 ± 0.024

6.573 ± 0.036

5.733 ± 0.037

6.39 ± 0.028

1.28 ± 0.013

4.05 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski