Capnocytophaga canis

Taxonomy: cellular organisms; Bacteria; FCB group; Bacteroidetes/Chlorobi group; Bacteroidetes; Flavobacteriia; Flavobacteriales; Flavobacteriaceae; Capnocytophaga

Average proteome isoelectric point is 6.88

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2202 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0B7HU15|A0A0B7HU15_9FLAO Glutamate dehydrogenase OS=Capnocytophaga canis OX=1848903 GN=gdhA PE=3 SV=1
MM1 pKa = 7.65IYY3 pKa = 10.38KK4 pKa = 9.91FRR6 pKa = 11.84IILDD10 pKa = 3.39VKK12 pKa = 10.4EE13 pKa = 4.54DD14 pKa = 3.64VFRR17 pKa = 11.84DD18 pKa = 3.34IAIEE22 pKa = 4.15GDD24 pKa = 3.29ATLEE28 pKa = 4.1DD29 pKa = 3.74LHH31 pKa = 8.32NIIVQSFGFAGDD43 pKa = 3.71EE44 pKa = 3.98MASFYY49 pKa = 10.78LTDD52 pKa = 3.85EE53 pKa = 4.61DD54 pKa = 4.31WNQGEE59 pKa = 4.98EE60 pKa = 3.77ITLFDD65 pKa = 4.32LSEE68 pKa = 4.37SGEE71 pKa = 3.9IRR73 pKa = 11.84LMEE76 pKa = 4.34EE77 pKa = 3.66TSIDD81 pKa = 3.67SVVSEE86 pKa = 4.87EE87 pKa = 4.24EE88 pKa = 3.81PKK90 pKa = 10.83LLYY93 pKa = 10.8VYY95 pKa = 10.53DD96 pKa = 4.85FFSMWTFFVEE106 pKa = 4.23LVEE109 pKa = 5.17IADD112 pKa = 3.89EE113 pKa = 4.45YY114 pKa = 10.79EE115 pKa = 4.27NGVSYY120 pKa = 9.62PALLFSHH127 pKa = 6.21GTIPAEE133 pKa = 4.09APEE136 pKa = 4.26KK137 pKa = 10.8LFEE140 pKa = 4.48AEE142 pKa = 4.44NFNEE146 pKa = 5.12FDD148 pKa = 5.33DD149 pKa = 4.37EE150 pKa = 5.31FNDD153 pKa = 3.7FDD155 pKa = 4.43MDD157 pKa = 3.78EE158 pKa = 4.04EE159 pKa = 5.37DD160 pKa = 3.72YY161 pKa = 11.64EE162 pKa = 4.33NFRR165 pKa = 11.84EE166 pKa = 3.86EE167 pKa = 4.86DD168 pKa = 4.04YY169 pKa = 11.37YY170 pKa = 11.94

Molecular weight: 20.04 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0B7HWM9|A0A0B7HWM9_9FLAO Uncharacterized protein OS=Capnocytophaga canis OX=1848903 GN=CCAND38_420082 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.59RR3 pKa = 11.84TFQPSKK9 pKa = 9.13RR10 pKa = 11.84KK11 pKa = 9.48RR12 pKa = 11.84RR13 pKa = 11.84NKK15 pKa = 9.49HH16 pKa = 3.94GFRR19 pKa = 11.84EE20 pKa = 4.19RR21 pKa = 11.84MATANGRR28 pKa = 11.84KK29 pKa = 8.93VLARR33 pKa = 11.84RR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.08GRR39 pKa = 11.84KK40 pKa = 8.3KK41 pKa = 9.83LTVSSEE47 pKa = 3.9PRR49 pKa = 11.84HH50 pKa = 5.77KK51 pKa = 10.61KK52 pKa = 9.84

Molecular weight: 6.26 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2202

0

2202

706585

22

4054

320.9

36.48

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.982 ± 0.054

0.756 ± 0.015

5.112 ± 0.035

6.877 ± 0.054

5.432 ± 0.043

6.144 ± 0.045

1.862 ± 0.022

7.91 ± 0.053

8.035 ± 0.056

9.144 ± 0.057

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.303 ± 0.023

5.865 ± 0.043

3.328 ± 0.03

3.781 ± 0.034

3.829 ± 0.031

6.306 ± 0.038

5.587 ± 0.061

6.44 ± 0.039

1.056 ± 0.02

4.251 ± 0.045
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski