Cryptosporangium arvum DSM 44712

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Cryptosporangiales; Cryptosporangiaceae; Cryptosporangium; Cryptosporangium arvum

Average proteome isoelectric point is 6.37

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 4033 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A010ZSE2|A0A010ZSE2_9ACTN Carbohydrate ABC transporter membrane protein 1 CUT1 family OS=Cryptosporangium arvum DSM 44712 OX=927661 GN=CryarDRAFT_2727 PE=3 SV=1
MM1 pKa = 7.12SALVKK6 pKa = 10.38RR7 pKa = 11.84LAAAGSLIAAGAALVLVPSPAYY29 pKa = 10.46ADD31 pKa = 3.65TVTVNYY37 pKa = 10.23SCEE40 pKa = 3.95IPLSGTQTGDD50 pKa = 3.32VEE52 pKa = 4.64VTITAPATATVGEE65 pKa = 4.57TVDD68 pKa = 3.52VTVTTGPIPILPPIDD83 pKa = 4.79LDD85 pKa = 4.09AGSVTPSGEE94 pKa = 4.16VTVSGAQTGAVAVTGTPNPEE114 pKa = 4.26PYY116 pKa = 9.66PANQPVQLTALTGQLTLTTAGEE138 pKa = 4.4VQLSPGAVNATATTIFGTFTIPCVPTATPTPVAAVISVSS177 pKa = 3.15

Molecular weight: 17.31 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A010ZQ45|A0A010ZQ45_9ACTN Kef-type K+ ransport system predicted NAD-binding component OS=Cryptosporangium arvum DSM 44712 OX=927661 GN=CryarDRAFT_1859 PE=4 SV=1
MM1 pKa = 7.21VSTVRR6 pKa = 11.84KK7 pKa = 8.51IRR9 pKa = 11.84TVRR12 pKa = 11.84TVSDD16 pKa = 3.24VHH18 pKa = 4.84TVRR21 pKa = 11.84NIRR24 pKa = 11.84TSRR27 pKa = 11.84SVCTMSTVRR36 pKa = 11.84ISRR39 pKa = 11.84NVRR42 pKa = 11.84TSRR45 pKa = 11.84NVCTMSTVRR54 pKa = 11.84TSRR57 pKa = 11.84NVRR60 pKa = 11.84TMSTVRR66 pKa = 11.84TSHH69 pKa = 5.87NVRR72 pKa = 11.84TMSTVRR78 pKa = 11.84TTRR81 pKa = 11.84NVRR84 pKa = 11.84TMRR87 pKa = 11.84ALRR90 pKa = 11.84FVRR93 pKa = 11.84PVRR96 pKa = 11.84LIPALRR102 pKa = 11.84HH103 pKa = 4.96VSTLRR108 pKa = 11.84HH109 pKa = 5.62VGTLHH114 pKa = 6.7FVRR117 pKa = 11.84INGKK121 pKa = 9.22RR122 pKa = 11.84LSEE125 pKa = 4.0RR126 pKa = 11.84DD127 pKa = 3.1AQRR130 pKa = 11.84ILRR133 pKa = 11.84RR134 pKa = 11.84LHH136 pKa = 5.96RR137 pKa = 11.84RR138 pKa = 11.84RR139 pKa = 11.84SLRR142 pKa = 11.84RR143 pKa = 11.84RR144 pKa = 11.84AVLRR148 pKa = 11.84GTVQQRR154 pKa = 11.84TLRR157 pKa = 11.84RR158 pKa = 11.84PTLQRR163 pKa = 11.84RR164 pKa = 11.84TLRR167 pKa = 11.84RR168 pKa = 11.84RR169 pKa = 11.84SAHH172 pKa = 4.94EE173 pKa = 3.67LRR175 pKa = 11.84RR176 pKa = 11.84GKK178 pKa = 7.92QLRR181 pKa = 11.84RR182 pKa = 11.84SRR184 pKa = 11.84SRR186 pKa = 11.84LKK188 pKa = 10.54IGWIGHH194 pKa = 4.43TVRR197 pKa = 11.84LRR199 pKa = 11.84RR200 pKa = 11.84VVNKK204 pKa = 9.7PPAPISDD211 pKa = 3.81HH212 pKa = 5.67PRR214 pKa = 11.84SRR216 pKa = 11.84ILQCRR221 pKa = 11.84RR222 pKa = 11.84VLQRR226 pKa = 11.84GRR228 pKa = 11.84PGLHH232 pKa = 4.52VRR234 pKa = 11.84IRR236 pKa = 11.84RR237 pKa = 11.84QAEE240 pKa = 3.82IRR242 pKa = 11.84PGPPRR247 pKa = 11.84PLPPPIAVPVNEE259 pKa = 4.11QQRR262 pKa = 11.84PGHH265 pKa = 4.76SRR267 pKa = 11.84RR268 pKa = 11.84RR269 pKa = 11.84RR270 pKa = 11.84RR271 pKa = 11.84TLRR274 pKa = 3.46

Molecular weight: 32.44 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

4033

0

4033

1372967

13

14508

340.4

36.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

14.16 ± 0.06

0.659 ± 0.01

6.159 ± 0.036

5.206 ± 0.03

2.767 ± 0.023

9.222 ± 0.05

2.059 ± 0.018

3.312 ± 0.036

1.613 ± 0.03

10.735 ± 0.046

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.509 ± 0.016

1.715 ± 0.023

6.077 ± 0.043

2.487 ± 0.022

8.252 ± 0.047

5.2 ± 0.028

6.101 ± 0.032

9.342 ± 0.05

1.509 ± 0.017

1.915 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski