Schlumbergera virus X

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.79

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q6UNI9|Q6UNI9_9VIRU Triple gene block protein 2 OS=Schlumbergera virus X OX=253700 PE=4 SV=1
MM1 pKa = 7.33FLLYY5 pKa = 10.7SLIGVVVGIAIIVVLNTLNSPSCTIILNGHH35 pKa = 4.78STIIQGCTQLSNLDD49 pKa = 3.83SVIEE53 pKa = 4.01ALNHH57 pKa = 5.79RR58 pKa = 11.84LSS60 pKa = 3.5

Molecular weight: 6.39 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q6UNJ0|Q6UNJ0_9VIRU Triple gene block protein 1 OS=Schlumbergera virus X OX=253700 PE=4 SV=1
MM1 pKa = 7.4SGAPIHH7 pKa = 6.13LTPPPDD13 pKa = 3.26QTKK16 pKa = 10.61VIFPLTVGLGLTLVVYY32 pKa = 10.64SLTRR36 pKa = 11.84STLPHH41 pKa = 6.78VGDD44 pKa = 4.02STHH47 pKa = 6.49SLPHH51 pKa = 6.23GGTYY55 pKa = 9.76RR56 pKa = 11.84DD57 pKa = 3.57GTKK60 pKa = 10.22SVNYY64 pKa = 7.17YY65 pKa = 10.2QPSHH69 pKa = 6.62PVSNHH74 pKa = 5.52LPLIFVLGLIVAIYY88 pKa = 10.7VSTLFSNRR96 pKa = 11.84SRR98 pKa = 11.84GRR100 pKa = 11.84HH101 pKa = 5.62CNHH104 pKa = 6.97CGAKK108 pKa = 9.82HH109 pKa = 5.11AA110 pKa = 4.94

Molecular weight: 11.89 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2169

60

1545

433.8

48.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

7.1 ± 0.739

1.291 ± 0.234

4.518 ± 0.772

5.994 ± 1.201

4.472 ± 0.636

5.118 ± 0.573

3.642 ± 0.743

5.671 ± 0.795

6.132 ± 1.23

9.959 ± 1.193

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.982 ± 0.45

4.518 ± 0.639

6.455 ± 0.512

4.61 ± 0.359

4.195 ± 0.258

7.423 ± 1.252

7.146 ± 0.386

5.486 ± 0.88

1.199 ± 0.314

3.089 ± 0.227
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski