Peach chlorotic mottle virus

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Betaflexiviridae; Quinvirinae; Foveavirus

Average proteome isoelectric point is 6.65

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A8C5N4|A8C5N4_9VIRU Movement protein TGB2 OS=Peach chlorotic mottle virus OX=471498 PE=3 SV=1
MM1 pKa = 7.45DD2 pKa = 4.17TVVSLLFEE10 pKa = 4.47YY11 pKa = 10.64GFEE14 pKa = 4.1RR15 pKa = 11.84TSVPIEE21 pKa = 4.41DD22 pKa = 4.06KK23 pKa = 11.11LIVHH27 pKa = 6.95AVPGSGKK34 pKa = 6.97TTLIRR39 pKa = 11.84EE40 pKa = 4.29ALNRR44 pKa = 11.84NLGIEE49 pKa = 4.06AFSFGEE55 pKa = 3.97PDD57 pKa = 4.78LPNIWGRR64 pKa = 11.84YY65 pKa = 5.41IKK67 pKa = 10.43KK68 pKa = 10.31AISGQKK74 pKa = 8.72GTGSFCILDD83 pKa = 3.88EE84 pKa = 4.22YY85 pKa = 11.42LSGEE89 pKa = 4.18FGTGFDD95 pKa = 4.72CFFSDD100 pKa = 3.37PHH102 pKa = 6.98QNSGDD107 pKa = 3.73CAPAHH112 pKa = 5.08FVGRR116 pKa = 11.84SSQRR120 pKa = 11.84FGRR123 pKa = 11.84NTAGLLQSLGYY134 pKa = 9.73SVNSAKK140 pKa = 10.49DD141 pKa = 3.35DD142 pKa = 3.71EE143 pKa = 5.75LIFEE147 pKa = 4.38NVFRR151 pKa = 11.84AEE153 pKa = 4.03LEE155 pKa = 4.12GAVICVEE162 pKa = 4.1KK163 pKa = 10.88NVEE166 pKa = 5.07DD167 pKa = 4.19FLRR170 pKa = 11.84WNHH173 pKa = 5.86CEE175 pKa = 3.75YY176 pKa = 10.9RR177 pKa = 11.84LPCQVRR183 pKa = 11.84GSTFEE188 pKa = 4.01VVTFIHH194 pKa = 6.61EE195 pKa = 4.31LPLDD199 pKa = 3.73QLVGPDD205 pKa = 4.16LYY207 pKa = 10.63IALTRR212 pKa = 11.84HH213 pKa = 5.22SKK215 pKa = 10.44KK216 pKa = 10.27IQILTNN222 pKa = 3.61

Molecular weight: 24.8 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A8C5N5|A8C5N5_9VIRU Movement protein TGBp3 OS=Peach chlorotic mottle virus OX=471498 PE=3 SV=1
MM1 pKa = 7.88PLAQPPDD8 pKa = 3.72FSKK11 pKa = 11.13SVFPLAIGLAVGIVIFALTRR31 pKa = 11.84STLPHH36 pKa = 6.55AGDD39 pKa = 4.63NIHH42 pKa = 6.71HH43 pKa = 6.9LPHH46 pKa = 6.55GGSYY50 pKa = 11.12VDD52 pKa = 3.52GTKK55 pKa = 10.3KK56 pKa = 10.29INYY59 pKa = 7.51CGPKK63 pKa = 10.03EE64 pKa = 4.16SFPTPGVLGLKK75 pKa = 10.13FYY77 pKa = 10.89AFCLACCILAYY88 pKa = 10.38LHH90 pKa = 6.15ATFRR94 pKa = 11.84GNNSSVRR101 pKa = 11.84CPTCINNPQHH111 pKa = 6.56CVRR114 pKa = 11.84SS115 pKa = 3.84

Molecular weight: 12.37 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

2941

67

2135

588.2

65.71

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.916 ± 1.451

2.822 ± 0.717

4.998 ± 0.78

5.848 ± 0.713

6.358 ± 0.684

6.698 ± 0.987

2.618 ± 0.724

6.256 ± 0.582

6.12 ± 1.151

9.895 ± 0.845

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.87 ± 0.437

4.25 ± 0.272

4.76 ± 0.963

2.822 ± 0.296

4.726 ± 0.42

9.351 ± 0.994

5.168 ± 1.719

5.78 ± 0.634

1.054 ± 0.261

2.686 ± 0.115
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski