Jiangella rhizosphaerae

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Jiangellales; Jiangellaceae; Jiangella

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6027 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A418KPU2|A0A418KPU2_9ACTN Iron ABC transporter permease OS=Jiangella rhizosphaerae OX=2293569 GN=DY240_14775 PE=3 SV=1
MM1 pKa = 7.43PVSPRR6 pKa = 11.84RR7 pKa = 11.84SVVLGTVAIALALGACGGGDD27 pKa = 4.18DD28 pKa = 4.32GGEE31 pKa = 3.88AAGEE35 pKa = 4.1GDD37 pKa = 3.29NVVTVRR43 pKa = 11.84GCNPQSAFVPANSNEE58 pKa = 4.1VCSGDD63 pKa = 3.73ILDD66 pKa = 3.97QVFSFLIRR74 pKa = 11.84YY75 pKa = 8.34DD76 pKa = 3.7AEE78 pKa = 4.22TGEE81 pKa = 4.33PTNEE85 pKa = 3.36IAADD89 pKa = 3.12ITTPDD94 pKa = 4.02NGLTWTITLEE104 pKa = 4.66DD105 pKa = 3.48GWTFHH110 pKa = 7.46DD111 pKa = 5.33GSPVTAQSFVDD122 pKa = 3.58AWNWAAYY129 pKa = 9.73GDD131 pKa = 3.99NATLNSYY138 pKa = 10.16FFEE141 pKa = 5.46PIQGYY146 pKa = 10.57AEE148 pKa = 4.1VQNQVDD154 pKa = 3.59ADD156 pKa = 3.96GNPIEE161 pKa = 4.71GTAQAEE167 pKa = 4.51TMSGLEE173 pKa = 4.09VVDD176 pKa = 5.14DD177 pKa = 3.7LTFNVTLTQAEE188 pKa = 4.59SQFPMRR194 pKa = 11.84LGYY197 pKa = 8.26TAFAPLPEE205 pKa = 4.56SFYY208 pKa = 10.99EE209 pKa = 4.22DD210 pKa = 3.64PEE212 pKa = 4.91AFGQHH217 pKa = 7.0PIGTGPFQFEE227 pKa = 3.93SWEE230 pKa = 4.01PNIDD234 pKa = 3.49VRR236 pKa = 11.84LTAYY240 pKa = 9.64PDD242 pKa = 3.42YY243 pKa = 11.2NGDD246 pKa = 3.61VKK248 pKa = 10.98PSIDD252 pKa = 3.16GAIYY256 pKa = 10.2RR257 pKa = 11.84IYY259 pKa = 10.84EE260 pKa = 4.2NDD262 pKa = 3.31DD263 pKa = 2.99AAYY266 pKa = 10.95NDD268 pKa = 4.05LQADD272 pKa = 3.79QLDD275 pKa = 4.16IMPLLPTSALAGDD288 pKa = 4.72TYY290 pKa = 10.94RR291 pKa = 11.84IDD293 pKa = 3.51LGDD296 pKa = 3.47RR297 pKa = 11.84FISRR301 pKa = 11.84EE302 pKa = 3.82TGVFEE307 pKa = 5.15TITFAPASVDD317 pKa = 3.23EE318 pKa = 4.8RR319 pKa = 11.84FADD322 pKa = 3.55PRR324 pKa = 11.84IRR326 pKa = 11.84QAISMAINRR335 pKa = 11.84EE336 pKa = 4.09EE337 pKa = 3.75IVEE340 pKa = 4.21QIFSGARR347 pKa = 11.84TPATGWVSPVVVNGYY362 pKa = 9.52VEE364 pKa = 4.66GACGEE369 pKa = 4.29FCTYY373 pKa = 11.12DD374 pKa = 3.24PGAAQDD380 pKa = 5.34LYY382 pKa = 11.21AQTDD386 pKa = 4.79GIDD389 pKa = 3.6GPFPLSYY396 pKa = 10.81NADD399 pKa = 3.69SDD401 pKa = 3.69HH402 pKa = 6.55KK403 pKa = 10.19AWVEE407 pKa = 3.94AVCNQIDD414 pKa = 3.44ATLPVDD420 pKa = 4.17CVPTPFVDD428 pKa = 4.01LATFRR433 pKa = 11.84NEE435 pKa = 3.17ITNRR439 pKa = 11.84EE440 pKa = 4.11LTGMFRR446 pKa = 11.84TGWQMDD452 pKa = 4.0YY453 pKa = 11.08PSLEE457 pKa = 4.05NFLVPIFATGASANDD472 pKa = 3.52GDD474 pKa = 4.16YY475 pKa = 11.66SNAEE479 pKa = 3.67FDD481 pKa = 3.93QLVEE485 pKa = 3.99EE486 pKa = 4.56AARR489 pKa = 11.84TEE491 pKa = 4.37GEE493 pKa = 4.26AGAEE497 pKa = 4.27LYY499 pKa = 10.47RR500 pKa = 11.84QAEE503 pKa = 3.97ALLRR507 pKa = 11.84NDD509 pKa = 3.73MPAIPLWHH517 pKa = 6.76RR518 pKa = 11.84VNIAGYY524 pKa = 8.69SSHH527 pKa = 7.17VEE529 pKa = 3.94NVQLTVFQTVDD540 pKa = 3.73LLSVTTTGG548 pKa = 3.78

Molecular weight: 59.54 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A418KPX7|A0A418KPX7_9ACTN Type II toxin-antitoxin system Phd/YefM family antitoxin OS=Jiangella rhizosphaerae OX=2293569 GN=DY240_14385 PE=3 SV=1
MM1 pKa = 7.41VKK3 pKa = 9.03RR4 pKa = 11.84TFQPNNRR11 pKa = 11.84RR12 pKa = 11.84RR13 pKa = 11.84AKK15 pKa = 8.7THH17 pKa = 5.15GFRR20 pKa = 11.84LRR22 pKa = 11.84MRR24 pKa = 11.84TRR26 pKa = 11.84AGRR29 pKa = 11.84AILAARR35 pKa = 11.84RR36 pKa = 11.84SKK38 pKa = 10.78GRR40 pKa = 11.84AKK42 pKa = 10.73LSAA45 pKa = 3.92

Molecular weight: 5.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6027

0

6027

1902621

29

3103

315.7

33.7

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.932 ± 0.049

0.622 ± 0.008

6.685 ± 0.027

5.61 ± 0.033

2.787 ± 0.019

9.42 ± 0.03

2.103 ± 0.015

3.313 ± 0.023

1.363 ± 0.018

10.23 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.646 ± 0.013

1.686 ± 0.017

5.997 ± 0.027

2.547 ± 0.015

8.017 ± 0.038

4.847 ± 0.022

6.027 ± 0.028

9.477 ± 0.03

1.603 ± 0.016

2.087 ± 0.015
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski