Marinomonas ushuaiensis DSM 15871

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Oceanospirillales; Oceanospirillaceae; Marinomonas; Marinomonas ushuaiensis

Average proteome isoelectric point is 6.09

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3075 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|X7E135|X7E135_9GAMM Probable membrane transporter protein OS=Marinomonas ushuaiensis DSM 15871 OX=1122207 GN=MUS1_06970 PE=3 SV=1
MM1 pKa = 7.56KK2 pKa = 10.43SAFALSTVLLTSAAHH17 pKa = 7.15ADD19 pKa = 3.66FLGANAEE26 pKa = 4.06AGIFDD31 pKa = 4.38SSDD34 pKa = 2.86GSATYY39 pKa = 10.81ASLDD43 pKa = 3.44IQHH46 pKa = 7.8PIPLIPNLRR55 pKa = 11.84MDD57 pKa = 3.18VWDD60 pKa = 4.78FEE62 pKa = 5.0SDD64 pKa = 3.3PSGTDD69 pKa = 2.81ISHH72 pKa = 7.45LDD74 pKa = 3.19FTGYY78 pKa = 10.73YY79 pKa = 10.46GVGLLWASIEE89 pKa = 4.19GGLTFRR95 pKa = 11.84NLDD98 pKa = 3.52MTQGSSSDD106 pKa = 3.91SEE108 pKa = 4.52SVPMLFLAASLAIPGTGITLAAEE131 pKa = 4.45SKK133 pKa = 10.54SISSFDD139 pKa = 3.41SVTISDD145 pKa = 3.52QSFKK149 pKa = 10.6IQYY152 pKa = 9.56QPIPVLGLEE161 pKa = 3.96AGYY164 pKa = 10.7RR165 pKa = 11.84SIDD168 pKa = 3.38QEE170 pKa = 4.75TNFLGNIDD178 pKa = 3.63YY179 pKa = 10.74DD180 pKa = 4.26GYY182 pKa = 11.06FIGVTIDD189 pKa = 2.8II190 pKa = 4.79

Molecular weight: 20.25 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|X7E668|X7E668_9GAMM DNA topoisomerase I OS=Marinomonas ushuaiensis DSM 15871 OX=1122207 GN=MUS1_09815 PE=4 SV=1
MM1 pKa = 7.2QFNSHH6 pKa = 5.01EE7 pKa = 4.04QSRR10 pKa = 11.84ILEE13 pKa = 4.33MAWEE17 pKa = 4.29DD18 pKa = 3.49RR19 pKa = 11.84TPFEE23 pKa = 5.19AIEE26 pKa = 4.1LQFSLNEE33 pKa = 3.75QAVIKK38 pKa = 10.34LMRR41 pKa = 11.84RR42 pKa = 11.84SLKK45 pKa = 10.61SSSFRR50 pKa = 11.84LWRR53 pKa = 11.84ARR55 pKa = 11.84VNGRR59 pKa = 11.84KK60 pKa = 7.48TKK62 pKa = 10.56HH63 pKa = 5.41LMLRR67 pKa = 11.84SSDD70 pKa = 4.04VIRR73 pKa = 11.84GYY75 pKa = 11.05CPTQYY80 pKa = 10.85KK81 pKa = 9.93PRR83 pKa = 5.01

Molecular weight: 9.99 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3075

0

3075

976217

29

2097

317.5

35.22

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.408 ± 0.039

0.985 ± 0.014

5.538 ± 0.032

6.354 ± 0.043

4.277 ± 0.031

6.822 ± 0.037

2.13 ± 0.022

6.753 ± 0.036

5.406 ± 0.04

10.645 ± 0.053

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.669 ± 0.02

4.154 ± 0.03

3.888 ± 0.025

4.075 ± 0.032

4.49 ± 0.036

6.976 ± 0.039

5.352 ± 0.032

7.019 ± 0.039

1.196 ± 0.018

2.863 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski