Eclipta yellow vein virus

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus

Average proteome isoelectric point is 7.41

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0M4ATQ7|A0A0M4ATQ7_9GEMI Replication-associated protein OS=Eclipta yellow vein virus OX=875324 GN=AC1 PE=3 SV=1
MM1 pKa = 8.06WDD3 pKa = 3.35PLLNEE8 pKa = 4.38FPEE11 pKa = 4.68TVHH14 pKa = 7.0GFRR17 pKa = 11.84CMLAVKK23 pKa = 9.91YY24 pKa = 9.14LQQLSEE30 pKa = 4.6EE31 pKa = 4.3YY32 pKa = 10.92SPDD35 pKa = 3.21TVGYY39 pKa = 10.56DD40 pKa = 3.97LIRR43 pKa = 11.84DD44 pKa = 4.54LICILRR50 pKa = 11.84SRR52 pKa = 11.84NYY54 pKa = 9.65VEE56 pKa = 4.26ASCRR60 pKa = 11.84YY61 pKa = 7.36RR62 pKa = 11.84HH63 pKa = 6.19FYY65 pKa = 10.95ARR67 pKa = 11.84VEE69 pKa = 4.15STPASEE75 pKa = 4.25LRR77 pKa = 11.84QPIHH81 pKa = 6.33QPCCCPHH88 pKa = 6.78CPPPKK93 pKa = 8.72ISHH96 pKa = 6.17VGEE99 pKa = 4.01QAHH102 pKa = 6.28EE103 pKa = 4.35SEE105 pKa = 4.4AHH107 pKa = 5.7NVQDD111 pKa = 3.58VQKK114 pKa = 10.15PP115 pKa = 3.38

Molecular weight: 13.35 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0M4AKS6|A0A0M4AKS6_9GEMI AC4 protein OS=Eclipta yellow vein virus OX=875324 GN=AC4 PE=3 SV=1
MM1 pKa = 8.08DD2 pKa = 5.22LRR4 pKa = 11.84TGEE7 pKa = 5.09PITAAQAWSGAYY19 pKa = 7.65TWEE22 pKa = 4.36VPNPLYY28 pKa = 10.63FKK30 pKa = 10.52ILSHH34 pKa = 7.01DD35 pKa = 3.64NRR37 pKa = 11.84PFTSKK42 pKa = 10.08MDD44 pKa = 4.22IITIRR49 pKa = 11.84IQFNYY54 pKa = 9.82NLRR57 pKa = 11.84RR58 pKa = 11.84ALGVHH63 pKa = 5.82KK64 pKa = 10.54CFLTFRR70 pKa = 11.84VWTTLHH76 pKa = 6.82PPTGLFLRR84 pKa = 11.84VFKK87 pKa = 9.93TQVLKK92 pKa = 11.01YY93 pKa = 9.9LNNLGVISINAIIRR107 pKa = 11.84AVDD110 pKa = 3.21HH111 pKa = 6.21VLWKK115 pKa = 10.63KK116 pKa = 10.8LEE118 pKa = 3.8QTVYY122 pKa = 10.69VNQDD126 pKa = 3.08SEE128 pKa = 4.68IKK130 pKa = 10.48FNLYY134 pKa = 10.23

Molecular weight: 15.71 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

1130

112

363

188.3

21.54

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.575 ± 0.952

2.478 ± 0.656

4.779 ± 0.264

5.044 ± 0.972

4.513 ± 0.489

4.956 ± 0.542

3.628 ± 0.566

5.398 ± 0.503

5.487 ± 0.65

7.345 ± 0.927

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.858 ± 0.536

5.929 ± 0.548

6.372 ± 0.572

5.221 ± 0.93

6.106 ± 0.709

8.053 ± 1.371

5.664 ± 0.935

5.929 ± 1.312

1.681 ± 0.228

3.982 ± 0.503
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski