Acetomicrobium mobile (strain ATCC BAA-54 / DSM 13181 / JCM 12221 / NGA) (Acetomicrobium mobile)

Taxonomy: cellular organisms; Bacteria; Synergistetes; Synergistia; Synergistales; Synergistaceae; Acetomicrobium; Acetomicrobium mobile

Average proteome isoelectric point is 6.42

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2004 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|I4BWK4|I4BWK4_ACEMN L-asparaginase/GlutRNAGln amidotransferase subunit D OS=Acetomicrobium mobile (strain ATCC BAA-54 / DSM 13181 / JCM 12221 / NGA) OX=891968 GN=Anamo_1036 PE=3 SV=1
MM1 pKa = 7.5SKK3 pKa = 10.65LVTCIVCEE11 pKa = 4.21GKK13 pKa = 9.74IQVSDD18 pKa = 4.06DD19 pKa = 3.78LLEE22 pKa = 4.45GEE24 pKa = 5.39IIVCPDD30 pKa = 3.44CGSEE34 pKa = 4.37LEE36 pKa = 4.55VVSLDD41 pKa = 3.58PLTLEE46 pKa = 4.43EE47 pKa = 4.3APEE50 pKa = 4.0VQEE53 pKa = 4.76DD54 pKa = 3.23WGEE57 pKa = 3.77

Molecular weight: 6.21 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|I4BVH8|I4BVH8_ACEMN ABC-type transport system involved in resistance to organic solvents ATPase component OS=Acetomicrobium mobile (strain ATCC BAA-54 / DSM 13181 / JCM 12221 / NGA) OX=891968 GN=Anamo_0636 PE=4 SV=1
MM1 pKa = 8.0PKK3 pKa = 9.04RR4 pKa = 11.84TFQPHH9 pKa = 4.54VKK11 pKa = 9.17PRR13 pKa = 11.84KK14 pKa = 8.96RR15 pKa = 11.84KK16 pKa = 8.27MGFLARR22 pKa = 11.84TSSPSGRR29 pKa = 11.84RR30 pKa = 11.84ILRR33 pKa = 11.84NRR35 pKa = 11.84RR36 pKa = 11.84RR37 pKa = 11.84KK38 pKa = 9.17GRR40 pKa = 11.84QRR42 pKa = 11.84LAVV45 pKa = 3.51

Molecular weight: 5.41 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2004

0

2004

649885

29

1653

324.3

35.94

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.237 ± 0.051

1.336 ± 0.022

5.36 ± 0.042

6.879 ± 0.056

4.069 ± 0.037

7.933 ± 0.052

1.734 ± 0.021

7.116 ± 0.05

6.119 ± 0.048

10.475 ± 0.06

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.821 ± 0.023

3.265 ± 0.027

4.359 ± 0.033

2.553 ± 0.028

5.352 ± 0.038

5.982 ± 0.042

4.385 ± 0.033

7.774 ± 0.041

1.183 ± 0.023

3.07 ± 0.034
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski