Macaca fascicularis papillomavirus 8

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Alphapapillomavirus; Alphapapillomavirus 12

Average proteome isoelectric point is 6.67

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 8 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|C3PU98|C3PU98_RHPV1 Replication protein E1 OS=Macaca fascicularis papillomavirus 8 OX=471186 GN=E1 PE=3 SV=1
MM1 pKa = 7.69IGPKK5 pKa = 8.52PTLEE9 pKa = 5.47DD10 pKa = 2.94IVLDD14 pKa = 3.9LTPEE18 pKa = 4.18PVDD21 pKa = 4.52LYY23 pKa = 11.22CEE25 pKa = 4.05EE26 pKa = 4.17QLPDD30 pKa = 3.43SSEE33 pKa = 5.09DD34 pKa = 3.65EE35 pKa = 5.31DD36 pKa = 4.24EE37 pKa = 5.89DD38 pKa = 3.98EE39 pKa = 5.01VDD41 pKa = 3.43YY42 pKa = 11.27HH43 pKa = 7.27HH44 pKa = 7.64PARR47 pKa = 11.84PAEE50 pKa = 4.05QQCYY54 pKa = 10.09RR55 pKa = 11.84IVTSCGGCEE64 pKa = 3.58SALRR68 pKa = 11.84LVVVATRR75 pKa = 11.84DD76 pKa = 3.56EE77 pKa = 4.16VRR79 pKa = 11.84ALHH82 pKa = 6.67DD83 pKa = 4.28LLMGTLNIVCPNCAGRR99 pKa = 11.84AA100 pKa = 3.59

Molecular weight: 11.05 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|C3PUA2|C3PUA2_RHPV1 Minor capsid protein L2 OS=Macaca fascicularis papillomavirus 8 OX=471186 GN=L2 PE=3 SV=1
TT1 pKa = 6.51ATILFFVVLFLLLFLVGLVFCARR24 pKa = 11.84IPSLLLCLSVYY35 pKa = 10.97ASVLLLMLLFWVTITSPFAAFGLCLFCFLLPLFCIHH71 pKa = 6.64LHH73 pKa = 5.26ATSVVYY79 pKa = 9.76TRR81 pKa = 11.84LYY83 pKa = 10.38GG84 pKa = 3.55

Molecular weight: 9.42 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

8

0

8

2382

84

636

297.8

33.21

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.927 ± 0.635

2.981 ± 0.713

5.709 ± 0.52

5.374 ± 0.615

3.317 ± 0.61

6.717 ± 0.415

3.023 ± 0.39

3.778 ± 0.324

4.534 ± 0.832

8.942 ± 1.251

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.309 ± 0.386

2.855 ± 0.669

6.759 ± 1.251

4.24 ± 0.8

5.835 ± 0.694

7.179 ± 0.579

6.801 ± 0.478

7.389 ± 0.449

1.553 ± 0.258

3.778 ± 0.299
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski