Arboricoccus pini

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodospirillales; Geminicoccaceae; Arboricoccus

Average proteome isoelectric point is 6.64

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3717 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A212RWQ3|A0A212RWQ3_9PROT DNA-binding transcriptional regulator LysR family OS=Arboricoccus pini OX=1963835 GN=SAMN07250955_11638 PE=3 SV=1
MM1 pKa = 7.31SADD4 pKa = 3.17SATRR8 pKa = 11.84ARR10 pKa = 11.84DD11 pKa = 3.45MIDD14 pKa = 3.33NIGINIHH21 pKa = 6.79LSYY24 pKa = 11.18TDD26 pKa = 3.93GDD28 pKa = 4.01YY29 pKa = 11.46KK30 pKa = 11.34NYY32 pKa = 10.75DD33 pKa = 3.42SVIADD38 pKa = 4.43LGYY41 pKa = 11.09LGITLVRR48 pKa = 11.84DD49 pKa = 3.65RR50 pKa = 11.84VPNPNTNGGGGKK62 pKa = 10.06NYY64 pKa = 10.61GYY66 pKa = 10.53LADD69 pKa = 4.04AGIRR73 pKa = 11.84FDD75 pKa = 5.1LNASAAASDD84 pKa = 4.13FAGTMTLIEE93 pKa = 4.6NFVAAHH99 pKa = 6.66PGSVVAIEE107 pKa = 4.47GANEE111 pKa = 3.68VDD113 pKa = 4.33KK114 pKa = 11.81NPVSYY119 pKa = 11.0DD120 pKa = 3.13GLTGQAAALALQSDD134 pKa = 4.4IYY136 pKa = 11.11DD137 pKa = 3.75YY138 pKa = 11.83VHH140 pKa = 7.0TSTTLEE146 pKa = 5.38GIATWDD152 pKa = 3.28LTGITGGTDD161 pKa = 3.26FADD164 pKa = 3.56ASNAHH169 pKa = 7.0IYY171 pKa = 8.77PRR173 pKa = 11.84NGNQPQDD180 pKa = 3.46RR181 pKa = 11.84LGLAIEE187 pKa = 4.48TTLAAQPDD195 pKa = 4.11RR196 pKa = 11.84PMVITEE202 pKa = 4.31GGYY205 pKa = 8.45YY206 pKa = 9.38TLPGQGWGGVDD217 pKa = 3.12ATTQSIYY224 pKa = 10.19TINYY228 pKa = 8.95LLDD231 pKa = 3.79AVSQGVSTTFLYY243 pKa = 10.68QLLDD247 pKa = 3.81AYY249 pKa = 9.92TDD251 pKa = 3.52TTGTDD256 pKa = 3.12IEE258 pKa = 4.47KK259 pKa = 10.74HH260 pKa = 5.8FGLFDD265 pKa = 4.64ADD267 pKa = 4.0NNPKK271 pKa = 9.22QAAVALHH278 pKa = 6.43NFTTILSDD286 pKa = 3.53TGASATTFAVDD297 pKa = 3.17TLDD300 pKa = 4.0YY301 pKa = 11.3DD302 pKa = 3.91VTGWNSYY309 pKa = 7.3GHH311 pKa = 6.54SYY313 pKa = 10.95LFEE316 pKa = 6.17KK317 pKa = 10.79SDD319 pKa = 3.5GTFDD323 pKa = 2.99IALWYY328 pKa = 9.36EE329 pKa = 3.52QDD331 pKa = 3.04IWDD334 pKa = 4.37EE335 pKa = 4.39VNLVPIATTSTAIDD349 pKa = 3.96LALGSYY355 pKa = 9.79FRR357 pKa = 11.84VVEE360 pKa = 4.15VFDD363 pKa = 4.21PQLGTGAIATYY374 pKa = 10.64HH375 pKa = 6.86DD376 pKa = 4.55VDD378 pKa = 4.76HH379 pKa = 7.4LDD381 pKa = 3.7LLVNQDD387 pKa = 3.48ALIVQLEE394 pKa = 4.28PNGANAAPTIEE405 pKa = 4.32GVNPQQVVVGDD416 pKa = 4.35DD417 pKa = 3.51LTLSFTSDD425 pKa = 3.58MISDD429 pKa = 4.05ANGDD433 pKa = 4.03TVLLNATLANGSALPSWLTFDD454 pKa = 4.58PDD456 pKa = 3.0TWTLSGVATQTGKK469 pKa = 10.13WSILLTASDD478 pKa = 4.42HH479 pKa = 6.21YY480 pKa = 11.32GGASSLVFQLSVTSQDD496 pKa = 3.54HH497 pKa = 5.76EE498 pKa = 4.26QTPTITGDD506 pKa = 3.22GTIIGTKK513 pKa = 9.77AADD516 pKa = 3.82VIAGGDD522 pKa = 3.42NSDD525 pKa = 4.53TINASSGADD534 pKa = 2.72IVYY537 pKa = 10.05GHH539 pKa = 7.57AGNDD543 pKa = 4.05LINGGGDD550 pKa = 3.47ADD552 pKa = 4.41DD553 pKa = 5.34LYY555 pKa = 11.64GGAGNDD561 pKa = 3.79TLRR564 pKa = 11.84GDD566 pKa = 3.77AGADD570 pKa = 3.19RR571 pKa = 11.84LFGQGGDD578 pKa = 3.59DD579 pKa = 3.57TLAGGGGGFDD589 pKa = 5.04LLTGGAGADD598 pKa = 3.3TFIFRR603 pKa = 11.84GKK605 pKa = 10.23EE606 pKa = 3.5STGPVEE612 pKa = 4.21SVEE615 pKa = 4.1GFLVVQHH622 pKa = 6.41ARR624 pKa = 11.84IADD627 pKa = 3.67LDD629 pKa = 3.84FAEE632 pKa = 4.92GDD634 pKa = 3.8RR635 pKa = 11.84LQLSYY640 pKa = 10.7FVDD643 pKa = 3.49SSGVSLQKK651 pKa = 10.89AVGLSANIDD660 pKa = 3.83SLSGLGTLVHH670 pKa = 6.87FLEE673 pKa = 5.04TDD675 pKa = 3.57DD676 pKa = 4.68PSHH679 pKa = 6.85VIADD683 pKa = 4.05ASTDD687 pKa = 3.52TLTLILKK694 pKa = 9.94DD695 pKa = 3.9SNGGLHH701 pKa = 6.92ALEE704 pKa = 4.61LLHH707 pKa = 6.46YY708 pKa = 9.25ATIAA712 pKa = 3.26

Molecular weight: 74.6 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A212QSZ5|A0A212QSZ5_9PROT Uncharacterized protein OS=Arboricoccus pini OX=1963835 GN=SAMN07250955_103173 PE=4 SV=1
MM1 pKa = 7.44LVLGLTGSLAMGKK14 pKa = 9.57SRR16 pKa = 11.84TAAMFMAHH24 pKa = 7.73GIPVFDD30 pKa = 4.68SDD32 pKa = 3.9ATVHH36 pKa = 6.3GLYY39 pKa = 10.58APGGAAVLPILRR51 pKa = 11.84LFEE54 pKa = 5.02DD55 pKa = 4.53CGSVSDD61 pKa = 5.08GIDD64 pKa = 2.99RR65 pKa = 11.84AALGRR70 pKa = 11.84RR71 pKa = 11.84ILSDD75 pKa = 3.49DD76 pKa = 3.19TAMRR80 pKa = 11.84ALEE83 pKa = 4.22RR84 pKa = 11.84VVHH87 pKa = 5.83ALVRR91 pKa = 11.84SSQRR95 pKa = 11.84AFLEE99 pKa = 4.21TQARR103 pKa = 11.84LGHH106 pKa = 6.81WLTVLDD112 pKa = 4.52IPLLYY117 pKa = 10.54EE118 pKa = 3.92SGGDD122 pKa = 3.5RR123 pKa = 11.84RR124 pKa = 11.84CDD126 pKa = 3.48RR127 pKa = 11.84IVVVSASPFIQSQRR141 pKa = 11.84ALARR145 pKa = 11.84TGMTALRR152 pKa = 11.84LKK154 pKa = 10.71SLLEE158 pKa = 4.03RR159 pKa = 11.84QTPDD163 pKa = 4.14LRR165 pKa = 11.84KK166 pKa = 9.37QCLADD171 pKa = 4.1FVIHH175 pKa = 6.38TGGDD179 pKa = 3.07RR180 pKa = 11.84GRR182 pKa = 11.84LSRR185 pKa = 11.84NVAEE189 pKa = 5.18ILRR192 pKa = 11.84KK193 pKa = 8.48MRR195 pKa = 11.84QVQPHH200 pKa = 6.84AWPKK204 pKa = 9.62RR205 pKa = 11.84WW206 pKa = 3.14

Molecular weight: 22.74 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3717

0

3717

1199682

24

2625

322.8

35.03

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.565 ± 0.054

0.861 ± 0.013

5.639 ± 0.029

5.532 ± 0.036

3.578 ± 0.025

8.572 ± 0.04

2.083 ± 0.018

5.168 ± 0.032

2.912 ± 0.03

11.092 ± 0.056

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.435 ± 0.017

2.321 ± 0.021

5.419 ± 0.028

3.263 ± 0.025

7.524 ± 0.043

5.307 ± 0.031

5.101 ± 0.028

7.168 ± 0.03

1.32 ± 0.015

2.14 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski