Yam virus X

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Tymovirales; Alphaflexiviridae; Potexvirus

Average proteome isoelectric point is 6.15

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 5 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A096XMC6|A0A096XMC6_9VIRU Movement protein TGBp3 OS=Yam virus X OX=1503864 GN=TGB3 PE=3 SV=1
MM1 pKa = 7.5QPLDD5 pKa = 3.63WLVALLLLLGTVFAAITIYY24 pKa = 10.62KK25 pKa = 9.41EE26 pKa = 4.31PPCTLVLDD34 pKa = 4.82GASLTITGCKK44 pKa = 8.33LTPEE48 pKa = 5.61LISQISGLSPLRR60 pKa = 11.84GLSLQEE66 pKa = 3.95FF67 pKa = 4.37

Molecular weight: 7.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A096XLM0|A0A096XLM0_9VIRU Triple gene block 1 OS=Yam virus X OX=1503864 GN=TGB1 PE=4 SV=1
MM1 pKa = 7.95PLTPPPDD8 pKa = 3.36HH9 pKa = 6.38STTFRR14 pKa = 11.84IAAATVGLALIFFTLTRR31 pKa = 11.84STLPHH36 pKa = 6.48VGDD39 pKa = 4.85NIHH42 pKa = 6.59HH43 pKa = 6.84LPHH46 pKa = 6.61GGCYY50 pKa = 9.29RR51 pKa = 11.84DD52 pKa = 3.46GTKK55 pKa = 9.77TIKK58 pKa = 10.76YY59 pKa = 8.97NSPSANANNTPAWALPAVLILSALIYY85 pKa = 8.85ATSRR89 pKa = 11.84LASCSVTSTRR99 pKa = 11.84YY100 pKa = 9.91CIRR103 pKa = 11.84SDD105 pKa = 3.49NNLL108 pKa = 3.22

Molecular weight: 11.62 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

5

0

5

1997

67

1386

399.4

44.82

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

8.112 ± 1.376

1.953 ± 0.246

5.058 ± 0.451

5.859 ± 1.286

5.508 ± 0.724

4.407 ± 0.671

2.554 ± 0.503

6.209 ± 0.232

5.809 ± 1.399

10.516 ± 1.745

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.953 ± 0.476

5.258 ± 0.632

5.158 ± 0.754

3.906 ± 0.588

4.457 ± 0.367

7.011 ± 0.546

7.461 ± 1.131

5.108 ± 0.711

1.002 ± 0.183

2.704 ± 0.426
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski