Turkey associated porprismacovirus 1

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Arfiviricetes; Cremevirales; Smacoviridae; Porprismacovirus

Average proteome isoelectric point is 6.44

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|W0GEQ0|W0GEQ0_9VIRU Capsid protein OS=Turkey associated porprismacovirus 1 OX=2170130 PE=4 SV=1
MM1 pKa = 6.48VAVRR5 pKa = 11.84VSEE8 pKa = 4.31TYY10 pKa = 10.76DD11 pKa = 3.27LSTKK15 pKa = 9.04IGKK18 pKa = 8.47MGLVGIHH25 pKa = 6.31TPTGDD30 pKa = 4.17LISRR34 pKa = 11.84MWPGLILQHH43 pKa = 6.04EE44 pKa = 4.62KK45 pKa = 10.79FRR47 pKa = 11.84FVKK50 pKa = 10.39CDD52 pKa = 2.95VAMACASMLPADD64 pKa = 4.26PLQIGVEE71 pKa = 4.06AGAIAPQDD79 pKa = 3.54MFNPILYY86 pKa = 9.62KK87 pKa = 10.55AVSNEE92 pKa = 4.08SMNQFQAWLNIVNQTAGLTGAFNQGSVVDD121 pKa = 4.11VNDD124 pKa = 4.13PNFVGANGTHH134 pKa = 6.93EE135 pKa = 4.16YY136 pKa = 10.78DD137 pKa = 3.44QFSMYY142 pKa = 10.32YY143 pKa = 10.72ALLADD148 pKa = 3.43SDD150 pKa = 4.11GWRR153 pKa = 11.84KK154 pKa = 10.33SMPQAGLEE162 pKa = 4.0MRR164 pKa = 11.84GLYY167 pKa = 9.85PLVFQVVSQFGSGPEE182 pKa = 3.96NSAGDD187 pKa = 3.93ADD189 pKa = 4.66SNISVPGLSGEE200 pKa = 4.37AADD203 pKa = 4.88ASPTSRR209 pKa = 11.84FGTVSSIQNRR219 pKa = 11.84TMRR222 pKa = 11.84GPSMRR227 pKa = 11.84MPAIDD232 pKa = 3.04TTFFVNSTSTDD243 pKa = 3.29SALLPGGINVDD254 pKa = 3.38TSLDD258 pKa = 3.94KK259 pKa = 11.4VPPAYY264 pKa = 10.27VGLIILPPARR274 pKa = 11.84LNQLYY279 pKa = 10.21YY280 pKa = 10.31RR281 pKa = 11.84LKK283 pKa = 8.78VTWTIEE289 pKa = 4.03FTGLRR294 pKa = 11.84SAVDD298 pKa = 2.97ISNWFNLQNIGQLAYY313 pKa = 10.38GSDD316 pKa = 4.08YY317 pKa = 10.93EE318 pKa = 4.37SQSAKK323 pKa = 9.97MSAKK327 pKa = 9.7TGMVDD332 pKa = 3.29TTGSSITKK340 pKa = 9.95IMEE343 pKa = 4.19GSS345 pKa = 3.18

Molecular weight: 37.18 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|W0GEQ0|W0GEQ0_9VIRU Capsid protein OS=Turkey associated porprismacovirus 1 OX=2170130 PE=4 SV=1
MM1 pKa = 7.58KK2 pKa = 9.88KK3 pKa = 10.66YY4 pKa = 10.74IMTVPRR10 pKa = 11.84SVPKK14 pKa = 10.24KK15 pKa = 9.7ALKK18 pKa = 10.51IMIDD22 pKa = 3.62VNDD25 pKa = 3.89CKK27 pKa = 10.84KK28 pKa = 10.09WIIGKK33 pKa = 8.89EE34 pKa = 3.81RR35 pKa = 11.84GKK37 pKa = 10.39NGYY40 pKa = 7.35EE41 pKa = 3.32HH42 pKa = 5.58WQIRR46 pKa = 11.84IEE48 pKa = 4.1TSNDD52 pKa = 3.12EE53 pKa = 3.95FFKK56 pKa = 10.0WCKK59 pKa = 9.35HH60 pKa = 6.21HH61 pKa = 7.13IPAAHH66 pKa = 6.86IEE68 pKa = 4.03EE69 pKa = 4.45AQQGVDD75 pKa = 2.8EE76 pKa = 4.66CLYY79 pKa = 10.31EE80 pKa = 4.45RR81 pKa = 11.84KK82 pKa = 9.86EE83 pKa = 4.17GQFWTSSDD91 pKa = 3.32RR92 pKa = 11.84VEE94 pKa = 4.28TLHH97 pKa = 6.68QRR99 pKa = 11.84FGTLRR104 pKa = 11.84PRR106 pKa = 11.84QEE108 pKa = 3.89RR109 pKa = 11.84ALLALQSTNDD119 pKa = 3.5RR120 pKa = 11.84EE121 pKa = 4.33VMVWYY126 pKa = 9.52DD127 pKa = 3.23ANGNVGKK134 pKa = 10.23SWFCGALWEE143 pKa = 4.8RR144 pKa = 11.84GLAYY148 pKa = 7.93VTPPTVDD155 pKa = 3.07TVKK158 pKa = 11.13GLIQWVASCYY168 pKa = 9.46MDD170 pKa = 4.24GGWRR174 pKa = 11.84PYY176 pKa = 10.86VIIDD180 pKa = 4.59IPRR183 pKa = 11.84SWKK186 pKa = 9.98WSDD189 pKa = 3.42QLYY192 pKa = 10.52CAIEE196 pKa = 4.31SIKK199 pKa = 11.03DD200 pKa = 3.19GLIYY204 pKa = 9.12DD205 pKa = 4.11TRR207 pKa = 11.84YY208 pKa = 7.89HH209 pKa = 6.86ARR211 pKa = 11.84MINIRR216 pKa = 11.84GVKK219 pKa = 10.04VLVLTNTLPKK229 pKa = 9.94LDD231 pKa = 3.78KK232 pKa = 10.63LSRR235 pKa = 11.84DD236 pKa = 3.02RR237 pKa = 11.84WCIFEE242 pKa = 3.94FF243 pKa = 4.66

Molecular weight: 28.64 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2

0

2

588

243

345

294.0

32.91

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.973 ± 1.164

1.531 ± 0.773

5.952 ± 0.126

4.422 ± 1.002

3.571 ± 0.395

7.823 ± 0.944

1.531 ± 0.537

6.463 ± 0.776

5.102 ± 1.555

7.483 ± 0.279

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

3.741 ± 0.728

4.422 ± 0.646

4.762 ± 0.606

4.252 ± 0.314

5.102 ± 1.319

7.653 ± 1.789

5.782 ± 0.483

6.973 ± 0.222

2.891 ± 1.171

3.571 ± 0.311
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski