Candidatus Mycoplasma girerdii

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma

Average proteome isoelectric point is 7.63

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 572 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A097SSX4|A0A097SSX4_9MOLU Glycerol-3-phosphate acyltransferase OS=Candidatus Mycoplasma girerdii OX=1318617 GN=plsY PE=3 SV=1
MM1 pKa = 7.44SRR3 pKa = 11.84LLIDD7 pKa = 3.4VAYY10 pKa = 10.35DD11 pKa = 3.19IAKK14 pKa = 10.46QNFKK18 pKa = 10.75KK19 pKa = 10.46EE20 pKa = 4.06QFSFEE25 pKa = 4.46SLWDD29 pKa = 3.71LVTKK33 pKa = 10.47KK34 pKa = 9.42MRR36 pKa = 11.84YY37 pKa = 7.37SQEE40 pKa = 4.0QIEE43 pKa = 4.42SEE45 pKa = 3.7IGEE48 pKa = 4.47FYY50 pKa = 10.94SDD52 pKa = 2.92IMQDD56 pKa = 2.86SRR58 pKa = 11.84FIFCGRR64 pKa = 11.84NHH66 pKa = 6.24WRR68 pKa = 11.84LSEE71 pKa = 3.91YY72 pKa = 11.0LKK74 pKa = 10.88LDD76 pKa = 3.88EE77 pKa = 4.48KK78 pKa = 11.51HH79 pKa = 6.41NMQNMLYY86 pKa = 10.3DD87 pKa = 4.45LNQEE91 pKa = 3.99ICEE94 pKa = 4.04EE95 pKa = 4.9GYY97 pKa = 11.21DD98 pKa = 4.08KK99 pKa = 11.63VNEE102 pKa = 4.19KK103 pKa = 8.87PTLNDD108 pKa = 3.57DD109 pKa = 3.84EE110 pKa = 5.39EE111 pKa = 4.51EE112 pKa = 4.44LDD114 pKa = 3.83EE115 pKa = 5.29QDD117 pKa = 4.46IEE119 pKa = 4.41INEE122 pKa = 3.98EE123 pKa = 3.66NATEE127 pKa = 4.27FEE129 pKa = 4.49INDD132 pKa = 3.76EE133 pKa = 4.23EE134 pKa = 4.31EE135 pKa = 3.84ATYY138 pKa = 11.26EE139 pKa = 4.38NVGKK143 pKa = 10.14LLKK146 pKa = 10.57SSNDD150 pKa = 3.12KK151 pKa = 9.81TVDD154 pKa = 3.34GDD156 pKa = 3.68EE157 pKa = 4.44EE158 pKa = 4.18EE159 pKa = 4.26

Molecular weight: 19.01 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A097SSC7|A0A097SSC7_9MOLU Putative metal-dependent hydrolase OS=Candidatus Mycoplasma girerdii OX=1318617 GN=MGM1_1110 PE=4 SV=1
MM1 pKa = 7.58AKK3 pKa = 9.99KK4 pKa = 10.56SLIAKK9 pKa = 7.45QKK11 pKa = 10.21RR12 pKa = 11.84VPKK15 pKa = 9.89YY16 pKa = 8.12KK17 pKa = 8.93TRR19 pKa = 11.84GYY21 pKa = 7.88TRR23 pKa = 11.84CVRR26 pKa = 11.84CGRR29 pKa = 11.84PHH31 pKa = 6.07AVNRR35 pKa = 11.84KK36 pKa = 8.92FGLCRR41 pKa = 11.84ICLRR45 pKa = 11.84EE46 pKa = 3.88LAYY49 pKa = 10.58AGAIPGLKK57 pKa = 9.72KK58 pKa = 10.88SSWW61 pKa = 3.3

Molecular weight: 6.97 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

572

0

572

190691

34

1630

333.4

37.95

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.434 ± 0.089

1.239 ± 0.038

5.155 ± 0.073

5.294 ± 0.107

4.975 ± 0.08

5.129 ± 0.087

1.906 ± 0.046

9.941 ± 0.098

9.233 ± 0.136

9.196 ± 0.089

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.995 ± 0.052

8.165 ± 0.122

2.859 ± 0.045

3.303 ± 0.054

2.953 ± 0.065

6.498 ± 0.14

5.635 ± 0.099

5.786 ± 0.064

0.994 ± 0.038

4.31 ± 0.071
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski