Oceanicella actignis

Taxonomy: cellular organisms; Bacteria;

Average proteome isoelectric point is 6.83

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3013 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M7TKP1|A0A1M7TKP1_9RHOB Ureidoglycolate lyase OS=Oceanicella actignis OX=1189325 GN=SAMN05216200_107124 PE=4 SV=1
MM1 pKa = 7.47APKK4 pKa = 10.49AFALAALAALAAAPAGAGEE23 pKa = 4.4MFAGSYY29 pKa = 10.79DD30 pKa = 3.68GDD32 pKa = 3.46WLVRR36 pKa = 11.84VRR38 pKa = 11.84GIGVIPNEE46 pKa = 4.31SLTADD51 pKa = 5.37GIPGSDD57 pKa = 3.35ANITTSVVPEE67 pKa = 3.85LDD69 pKa = 2.56ITYY72 pKa = 9.74FFTPNIAAEE81 pKa = 4.99LILGTTPHH89 pKa = 6.84DD90 pKa = 3.9VSGRR94 pKa = 11.84GALAGADD101 pKa = 3.36IGSVWLLPPTLTLQYY116 pKa = 10.67HH117 pKa = 5.17VTQLGEE123 pKa = 4.05WTGSEE128 pKa = 4.05SLAKK132 pKa = 10.02VKK134 pKa = 10.18PYY136 pKa = 10.42FGAGVNYY143 pKa = 9.56TIFYY147 pKa = 10.76NEE149 pKa = 4.93DD150 pKa = 3.0AGQFNSIDD158 pKa = 3.51YY159 pKa = 11.05DD160 pKa = 3.85NAFGAALQAGVDD172 pKa = 3.83MEE174 pKa = 5.08LGDD177 pKa = 4.69GFYY180 pKa = 11.29LNADD184 pKa = 3.29VKK186 pKa = 11.02YY187 pKa = 10.76IFLEE191 pKa = 4.27TDD193 pKa = 2.68WSINDD198 pKa = 3.86GAITGSVDD206 pKa = 3.2INPLIVGLGLGYY218 pKa = 10.67RR219 pKa = 11.84FF220 pKa = 4.15

Molecular weight: 23.09 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M7SQ62|A0A1M7SQ62_9RHOB Uncharacterized protein OS=Oceanicella actignis OX=1189325 GN=SAMN05216200_10396 PE=4 SV=1
MM1 pKa = 7.35KK2 pKa = 9.4RR3 pKa = 11.84TYY5 pKa = 10.2QPSRR9 pKa = 11.84LVRR12 pKa = 11.84KK13 pKa = 9.21RR14 pKa = 11.84RR15 pKa = 11.84HH16 pKa = 4.48GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 9.03ILNARR34 pKa = 11.84RR35 pKa = 11.84ARR37 pKa = 11.84GRR39 pKa = 11.84KK40 pKa = 9.03RR41 pKa = 11.84LSAA44 pKa = 4.03

Molecular weight: 5.31 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3013

0

3013

998641

29

2959

331.4

35.6

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

16.458 ± 0.098

0.839 ± 0.013

5.599 ± 0.037

6.292 ± 0.043

3.317 ± 0.024

9.007 ± 0.048

1.852 ± 0.021

4.135 ± 0.032

2.259 ± 0.035

10.326 ± 0.049

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.485 ± 0.021

1.834 ± 0.021

6.136 ± 0.042

2.475 ± 0.021

9.083 ± 0.054

4.016 ± 0.025

4.038 ± 0.028

6.655 ± 0.033

1.44 ± 0.021

1.754 ± 0.021
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski