Coriobacteriaceae bacterium CHKCI002

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Coriobacteriia; Coriobacteriales; Coriobacteriaceae; unclassified Coriobacteriaceae

Average proteome isoelectric point is 6.02

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 2836 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A143XB61|A0A143XB61_9ACTN Aspartokinase OS=Coriobacteriaceae bacterium CHKCI002 OX=1780377 GN=lysC PE=3 SV=1
MM1 pKa = 7.97RR2 pKa = 11.84DD3 pKa = 2.8SFAYY7 pKa = 10.2VGNEE11 pKa = 4.04TVGSMVEE18 pKa = 3.86ARR20 pKa = 11.84LGALGYY26 pKa = 10.47VRR28 pKa = 11.84ASDD31 pKa = 3.38VGSARR36 pKa = 11.84TVVTYY41 pKa = 7.55CTSQTALEE49 pKa = 4.23DD50 pKa = 3.89AYY52 pKa = 10.87FDD54 pKa = 3.98EE55 pKa = 5.77GGLVQAAAAGTLLVDD70 pKa = 5.43LSPSTPGFARR80 pKa = 11.84EE81 pKa = 4.07LNAVAAVSDD90 pKa = 4.17LVAVEE95 pKa = 4.48APLAVVDD102 pKa = 4.79PVRR105 pKa = 11.84ADD107 pKa = 3.25AFSDD111 pKa = 3.44KK112 pKa = 11.35GNLVCFAAGDD122 pKa = 3.92EE123 pKa = 4.46DD124 pKa = 4.19ALAAARR130 pKa = 11.84PVLEE134 pKa = 4.31AVAGSVRR141 pKa = 11.84DD142 pKa = 3.56MGGAGAGQLARR153 pKa = 11.84AAWTLQATAQIVSAVEE169 pKa = 3.49ADD171 pKa = 3.23ALYY174 pKa = 10.34RR175 pKa = 11.84AVRR178 pKa = 11.84RR179 pKa = 11.84SSSPFGEE186 pKa = 3.85EE187 pKa = 3.62ALRR190 pKa = 11.84VGAAAPLAEE199 pKa = 4.4SVLAAVDD206 pKa = 3.37EE207 pKa = 4.54GRR209 pKa = 11.84FDD211 pKa = 3.15GGYY214 pKa = 7.01TVEE217 pKa = 4.35MFMAEE222 pKa = 4.27LSAALTAADD231 pKa = 4.7DD232 pKa = 4.32ADD234 pKa = 5.37LILPQAEE241 pKa = 4.32ACLHH245 pKa = 5.78LLEE248 pKa = 4.91LLAVIGGSDD257 pKa = 3.54KK258 pKa = 11.34APSALALVYY267 pKa = 10.83GEE269 pKa = 4.55EE270 pKa = 4.18AACAEE275 pKa = 4.53QGLDD279 pKa = 3.05WTRR282 pKa = 11.84AEE284 pKa = 4.28SAFGEE289 pKa = 4.56GDD291 pKa = 4.25DD292 pKa = 4.75EE293 pKa = 4.76DD294 pKa = 6.61AEE296 pKa = 4.64DD297 pKa = 4.47GCEE300 pKa = 4.06EE301 pKa = 4.29GCDD304 pKa = 4.76ADD306 pKa = 4.68GCGCGHH312 pKa = 6.85AHH314 pKa = 6.76GGYY317 pKa = 9.16RR318 pKa = 11.84DD319 pKa = 3.59YY320 pKa = 11.14PDD322 pKa = 3.43YY323 pKa = 10.65PGYY326 pKa = 10.52GAYY329 pKa = 9.92SANN332 pKa = 3.47

Molecular weight: 33.89 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A143X0U1|A0A143X0U1_9ACTN Thioesterase superfamily protein OS=Coriobacteriaceae bacterium CHKCI002 OX=1780377 GN=BN3658_00646 PE=4 SV=1
MM1 pKa = 7.38TPASTAWTWWAPTRR15 pKa = 11.84TARR18 pKa = 11.84ARR20 pKa = 11.84LRR22 pKa = 11.84SRR24 pKa = 11.84SARR27 pKa = 11.84GRR29 pKa = 11.84RR30 pKa = 11.84SKK32 pKa = 9.64TATTTRR38 pKa = 11.84PPCCPASPCRR48 pKa = 11.84RR49 pKa = 11.84SSPGATGRR57 pKa = 11.84RR58 pKa = 11.84TTRR61 pKa = 11.84SRR63 pKa = 11.84SRR65 pKa = 11.84CTACAPWTRR74 pKa = 11.84RR75 pKa = 11.84ARR77 pKa = 11.84PLRR80 pKa = 11.84RR81 pKa = 11.84AHH83 pKa = 6.42RR84 pKa = 11.84CRR86 pKa = 11.84RR87 pKa = 11.84PARR90 pKa = 11.84FPSARR95 pKa = 11.84SMRR98 pKa = 11.84PRR100 pKa = 11.84KK101 pKa = 9.7RR102 pKa = 11.84PSPRR106 pKa = 11.84AAPWRR111 pKa = 11.84RR112 pKa = 11.84RR113 pKa = 11.84SATSRR118 pKa = 11.84SPSRR122 pKa = 11.84APTSTACSSRR132 pKa = 11.84PRR134 pKa = 11.84TRR136 pKa = 11.84AATRR140 pKa = 11.84RR141 pKa = 11.84AASTTRR147 pKa = 11.84ARR149 pKa = 11.84STRR152 pKa = 11.84SQWPWPPTGRR162 pKa = 11.84ATSSPRR168 pKa = 11.84PRR170 pKa = 11.84LPLSPTTRR178 pKa = 11.84ASPPKK183 pKa = 10.28ARR185 pKa = 11.84AEE187 pKa = 4.21AGWPRR192 pKa = 11.84ASATPTRR199 pKa = 11.84IPRR202 pKa = 11.84SPPSTARR209 pKa = 11.84WTTPTRR215 pKa = 11.84AARR218 pKa = 11.84GLWKK222 pKa = 7.22TTCSRR227 pKa = 11.84SASKK231 pKa = 9.82PWATMPRR238 pKa = 11.84ARR240 pKa = 11.84RR241 pKa = 11.84APSSRR246 pKa = 11.84KK247 pKa = 9.06RR248 pKa = 11.84ATQAGCSRR256 pKa = 11.84SGRR259 pKa = 11.84PRR261 pKa = 11.84SRR263 pKa = 11.84TTTIWRR269 pKa = 11.84ARR271 pKa = 11.84RR272 pKa = 11.84SPTRR276 pKa = 11.84CGRR279 pKa = 11.84TSTRR283 pKa = 11.84ALATARR289 pKa = 11.84TEE291 pKa = 4.1PRR293 pKa = 11.84PHH295 pKa = 6.0LTGG298 pKa = 3.55

Molecular weight: 33.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

2836

0

2836

947897

29

9826

334.2

36.17

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

12.807 ± 0.089

1.653 ± 0.025

5.955 ± 0.053

6.675 ± 0.046

3.828 ± 0.031

8.597 ± 0.049

1.721 ± 0.022

4.301 ± 0.042

3.43 ± 0.041

9.26 ± 0.063

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.535 ± 0.024

2.583 ± 0.03

4.464 ± 0.031

2.636 ± 0.027

6.725 ± 0.068

5.838 ± 0.043

4.901 ± 0.045

8.224 ± 0.049

1.152 ± 0.019

2.715 ± 0.03
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski