Air potato virus 1

Taxonomy: Viruses; Riboviria; Orthornavirae; Kitrinoviricota; Alsuviricetes; Martellivirales; Closteroviridae; Ampelovirus; Air potato ampelovirus 1

Average proteome isoelectric point is 7.0

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A3G6V9C3|A0A3G6V9C3_9CLOS ORF5 OS=Air potato virus 1 OX=2491018 PE=4 SV=1
MM1 pKa = 7.6KK2 pKa = 10.49SHH4 pKa = 6.95LEE6 pKa = 4.07VVNVMFDD13 pKa = 3.45HH14 pKa = 5.76YY15 pKa = 10.68QINGLPFSMKK25 pKa = 9.17WVEE28 pKa = 4.91DD29 pKa = 3.58LFQFSDD35 pKa = 3.93FSTVVDD41 pKa = 3.44NVTITEE47 pKa = 4.18CQKK50 pKa = 9.6TPKK53 pKa = 10.07AYY55 pKa = 9.58KK56 pKa = 9.89IKK58 pKa = 10.93SLVPLVNSLRR68 pKa = 11.84PSPRR72 pKa = 11.84PQSLISNLYY81 pKa = 9.09VFEE84 pKa = 4.13TRR86 pKa = 11.84NYY88 pKa = 8.56NADD91 pKa = 3.54RR92 pKa = 11.84GVQNYY97 pKa = 7.49YY98 pKa = 10.16RR99 pKa = 11.84PPVVKK104 pKa = 10.21EE105 pKa = 3.72LVDD108 pKa = 3.84TFFSTYY114 pKa = 9.23IDD116 pKa = 3.6AGRR119 pKa = 11.84MCEE122 pKa = 4.09MIGDD126 pKa = 3.64IRR128 pKa = 11.84VVNSVSLEE136 pKa = 3.73EE137 pKa = 4.35WLDD140 pKa = 3.31SRR142 pKa = 11.84PAMGKK147 pKa = 9.89SGLLNDD153 pKa = 4.09LTKK156 pKa = 10.95DD157 pKa = 3.28PYY159 pKa = 11.16YY160 pKa = 10.51QDD162 pKa = 3.44SLNHH166 pKa = 6.39FKK168 pKa = 11.46YY169 pKa = 9.68MIKK172 pKa = 10.29SDD174 pKa = 4.14LKK176 pKa = 11.24SKK178 pKa = 10.8LDD180 pKa = 3.35YY181 pKa = 9.61TARR184 pKa = 11.84EE185 pKa = 4.04NLASGQNIVYY195 pKa = 9.92HH196 pKa = 5.68EE197 pKa = 4.15RR198 pKa = 11.84RR199 pKa = 11.84ICALFSSVFQDD210 pKa = 3.36LVRR213 pKa = 11.84VLKK216 pKa = 10.49FVLADD221 pKa = 3.54KK222 pKa = 10.58FLLYY226 pKa = 10.61HH227 pKa = 6.47GVNLDD232 pKa = 3.55EE233 pKa = 5.18FAQAMTNKK241 pKa = 7.72MTFPLASCYY250 pKa = 10.25CGEE253 pKa = 4.12VDD255 pKa = 3.66ISKK258 pKa = 10.61YY259 pKa = 10.67DD260 pKa = 3.33KK261 pKa = 10.96SQNQMTKK268 pKa = 9.12EE269 pKa = 4.04VEE271 pKa = 3.81LEE273 pKa = 3.57IYY275 pKa = 10.02RR276 pKa = 11.84RR277 pKa = 11.84LGMHH281 pKa = 7.48PDD283 pKa = 4.37LVDD286 pKa = 3.95LWACSDD292 pKa = 3.75FSSRR296 pKa = 11.84VGSMKK301 pKa = 10.5EE302 pKa = 4.18GILLDD307 pKa = 3.24IGAQRR312 pKa = 11.84RR313 pKa = 11.84TGTATTWIGNTLINMTLLAAAGDD336 pKa = 3.86VKK338 pKa = 11.21NFDD341 pKa = 3.31IAAFSGDD348 pKa = 3.78DD349 pKa = 3.39SLLLSRR355 pKa = 11.84EE356 pKa = 4.04RR357 pKa = 11.84IEE359 pKa = 4.94LDD361 pKa = 3.24SFVYY365 pKa = 9.92EE366 pKa = 3.75YY367 pKa = 11.27HH368 pKa = 6.71FGFDD372 pKa = 3.26VKK374 pKa = 10.53FYY376 pKa = 10.98GQATPYY382 pKa = 9.71FCSKK386 pKa = 10.53FLIPVNGRR394 pKa = 11.84VVFVPDD400 pKa = 3.59ALKK403 pKa = 11.15LFVNLGAEE411 pKa = 4.09WDD413 pKa = 3.75CDD415 pKa = 3.77KK416 pKa = 11.94NEE418 pKa = 3.96MFEE421 pKa = 4.18KK422 pKa = 10.59FKK424 pKa = 11.44SFVDD428 pKa = 3.86LTKK431 pKa = 11.07DD432 pKa = 3.26LVDD435 pKa = 3.55NSVVEE440 pKa = 3.84ILAVYY445 pKa = 10.2IEE447 pKa = 4.53EE448 pKa = 4.9KK449 pKa = 10.57YY450 pKa = 11.09GSNPWVFPSLCCINSLRR467 pKa = 11.84SNFAQFMRR475 pKa = 11.84CWRR478 pKa = 11.84LCQKK482 pKa = 10.81LLLKK486 pKa = 10.59DD487 pKa = 3.89RR488 pKa = 11.84EE489 pKa = 4.34LGDD492 pKa = 3.46VAEE495 pKa = 5.88DD496 pKa = 3.43IDD498 pKa = 4.26EE499 pKa = 4.66GGG501 pKa = 3.31

Molecular weight: 57.45 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A3G6V9B9|A0A3G6V9B9_9CLOS ORF3 OS=Air potato virus 1 OX=2491018 PE=3 SV=1
MM1 pKa = 7.44KK2 pKa = 10.42VDD4 pKa = 4.25DD5 pKa = 4.39SVNTGVSFSIIVFTFFLLIVIAATVVFCLYY35 pKa = 10.78FLFTKK40 pKa = 10.46RR41 pKa = 11.84RR42 pKa = 11.84RR43 pKa = 11.84EE44 pKa = 3.71QSGVEE49 pKa = 3.76RR50 pKa = 11.84PTFF53 pKa = 3.54

Molecular weight: 6.11 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

4305

53

2191

615.0

68.75

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.179 ± 0.3

1.928 ± 0.13

4.785 ± 0.596

5.807 ± 0.076

4.599 ± 0.455

6.179 ± 0.318

2.23 ± 0.312

5.203 ± 0.399

5.947 ± 0.59

9.895 ± 0.337

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.974 ± 0.152

4.019 ± 0.259

5.134 ± 0.402

3.089 ± 0.23

5.645 ± 0.265

8.548 ± 0.514

6.039 ± 0.41

8.293 ± 0.726

1.092 ± 0.171

3.415 ± 0.246
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski