Mycoplasma todarodis

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Mycoplasmatales; Mycoplasmataceae; Mycoplasma

Average proteome isoelectric point is 7.48

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 894 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A4R0XN55|A0A4R0XN55_9MOLU Lipoprotein signal peptidase OS=Mycoplasma todarodis OX=1937191 GN=C4B25_02755 PE=3 SV=1
MM1 pKa = 7.55EE2 pKa = 4.54VPEE5 pKa = 5.13FIQDD9 pKa = 3.69FLDD12 pKa = 3.82LVGNALLGIITGKK25 pKa = 6.28YY26 pKa = 6.58TCYY29 pKa = 9.81NAPGIYY35 pKa = 9.84YY36 pKa = 10.11DD37 pKa = 5.58LSSLDD42 pKa = 4.37LDD44 pKa = 4.06YY45 pKa = 11.38LSPEE49 pKa = 3.38IFKK52 pKa = 11.33YY53 pKa = 9.76MDD55 pKa = 3.13YY56 pKa = 10.85EE57 pKa = 4.38GRR59 pKa = 11.84DD60 pKa = 3.48VQINLILDD68 pKa = 3.5NKK70 pKa = 9.77FDD72 pKa = 4.12KK73 pKa = 10.22FTLVCYY79 pKa = 10.14IQRR82 pKa = 11.84FRR84 pKa = 11.84VV85 pKa = 3.3

Molecular weight: 9.98 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A4R0XQE9|A0A4R0XQE9_9MOLU Sulfatase domain-containing protein OS=Mycoplasma todarodis OX=1937191 GN=C4B25_00595 PE=4 SV=1
MM1 pKa = 7.23GVKK4 pKa = 10.36KK5 pKa = 10.06IRR7 pKa = 11.84KK8 pKa = 7.99KK9 pKa = 9.74RR10 pKa = 11.84RR11 pKa = 11.84HH12 pKa = 4.85GFRR15 pKa = 11.84ARR17 pKa = 11.84MSSVGGRR24 pKa = 11.84LVLKK28 pKa = 10.34RR29 pKa = 11.84RR30 pKa = 11.84RR31 pKa = 11.84AKK33 pKa = 10.14GRR35 pKa = 11.84KK36 pKa = 8.18QLTVSDD42 pKa = 4.08KK43 pKa = 11.41

Molecular weight: 5.03 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

894

0

894

290648

21

3377

325.1

36.79

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.489 ± 0.157

0.42 ± 0.015

5.167 ± 0.07

7.153 ± 0.091

4.818 ± 0.064

5.899 ± 0.092

1.657 ± 0.031

9.215 ± 0.095

10.623 ± 0.11

8.324 ± 0.068

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.625 ± 0.041

5.952 ± 0.078

2.827 ± 0.042

2.883 ± 0.033

3.23 ± 0.052

6.189 ± 0.057

5.879 ± 0.06

6.255 ± 0.063

1.119 ± 0.033

3.275 ± 0.056
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski