Salinimonas sediminis

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Alteromonadales; Alteromonadaceae; Salinimonas

Average proteome isoelectric point is 6.27

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3700 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A346NHQ7|A0A346NHQ7_9ALTE Class A beta-lactamase-related serine hydrolase OS=Salinimonas sediminis OX=2303538 GN=D0Y50_00975 PE=4 SV=1
MM1 pKa = 7.7KK2 pKa = 9.24LTRR5 pKa = 11.84YY6 pKa = 9.52GVLGVMAGTVLAACGGGSDD25 pKa = 4.17NSSSSTQNGSQTAGKK40 pKa = 9.68DD41 pKa = 3.06ASQIIGNASAHH52 pKa = 6.01SVSEE56 pKa = 4.09LNKK59 pKa = 9.94AARR62 pKa = 11.84SLASASYY69 pKa = 9.67TGSQEE74 pKa = 3.99KK75 pKa = 11.13AEE77 pKa = 4.54LDD79 pKa = 3.55FLLAQQVTRR88 pKa = 11.84MLLDD92 pKa = 4.65DD93 pKa = 4.59DD94 pKa = 4.21VLRR97 pKa = 11.84VPEE100 pKa = 4.26IVTHH104 pKa = 5.76EE105 pKa = 4.4LSPDD109 pKa = 2.95ARR111 pKa = 11.84QDD113 pKa = 3.44EE114 pKa = 4.93NINATFDD121 pKa = 3.79CDD123 pKa = 3.56EE124 pKa = 5.14GGSASYY130 pKa = 10.45SGQLNEE136 pKa = 4.66SGEE139 pKa = 4.29ASLSLNFDD147 pKa = 3.47NCKK150 pKa = 10.43SYY152 pKa = 11.79YY153 pKa = 9.96NDD155 pKa = 3.43SALTGVAALVIKK167 pKa = 10.84LDD169 pKa = 3.67VQQNTSAYY177 pKa = 8.74TLYY180 pKa = 10.62FDD182 pKa = 4.33NLRR185 pKa = 11.84WHH187 pKa = 7.45DD188 pKa = 3.85GQAVSLSGLMAFNEE202 pKa = 4.37SADD205 pKa = 3.05WEE207 pKa = 4.52MPYY210 pKa = 7.92TTLSQQYY217 pKa = 9.3IALSVGNEE225 pKa = 4.07TYY227 pKa = 11.18LLDD230 pKa = 4.92AEE232 pKa = 4.74TTGEE236 pKa = 4.14AEE238 pKa = 4.19SGSLLEE244 pKa = 4.3SMQGRR249 pKa = 11.84LSVASRR255 pKa = 11.84GYY257 pKa = 10.06IDD259 pKa = 5.87FSYY262 pKa = 10.87EE263 pKa = 3.98PQTYY267 pKa = 8.35TYY269 pKa = 10.32DD270 pKa = 3.82FNGSTLFFNGNEE282 pKa = 3.9AYY284 pKa = 11.09VNFEE288 pKa = 3.46QDD290 pKa = 2.47TAAFVIDD297 pKa = 3.83TDD299 pKa = 4.22QDD301 pKa = 3.48GTTDD305 pKa = 3.06AGKK308 pKa = 10.03ILSLADD314 pKa = 4.17FFAPPPADD322 pKa = 3.47ASLNPLTEE330 pKa = 4.28ISSQPYY336 pKa = 9.91AGEE339 pKa = 4.5PYY341 pKa = 10.18TNEE344 pKa = 3.36SYY346 pKa = 9.61YY347 pKa = 10.62TVSTDD352 pKa = 2.79IDD354 pKa = 3.34ISPGYY359 pKa = 9.97FFDD362 pKa = 4.33IEE364 pKa = 4.51TPRR367 pKa = 11.84SQLEE371 pKa = 3.75ISYY374 pKa = 9.88NWYY377 pKa = 9.92INGILLEE384 pKa = 4.47GVHH387 pKa = 6.7GSTLPAYY394 pKa = 10.09SAGVHH399 pKa = 6.72DD400 pKa = 5.23EE401 pKa = 4.42VTVSMVVSDD410 pKa = 3.69ATHH413 pKa = 6.55SYY415 pKa = 10.87EE416 pKa = 5.78SYY418 pKa = 10.04QQYY421 pKa = 10.08IWLEE425 pKa = 4.0DD426 pKa = 3.55MPAEE430 pKa = 4.09LTVTDD435 pKa = 4.51MPASIAAGEE444 pKa = 4.32TVSFSVVLTDD454 pKa = 4.97PDD456 pKa = 3.71IEE458 pKa = 4.51SADD461 pKa = 3.47NLARR465 pKa = 11.84LTNAPQGASMSEE477 pKa = 4.22DD478 pKa = 3.19GTVTWQVPQDD488 pKa = 3.92LLFSEE493 pKa = 4.2QNYY496 pKa = 9.19YY497 pKa = 10.88FGFSNRR503 pKa = 11.84LNPNEE508 pKa = 4.33TIEE511 pKa = 4.25KK512 pKa = 9.34TVTATVNASQPLPLFRR528 pKa = 11.84SGIEE532 pKa = 3.7VPAANRR538 pKa = 11.84SQWVVDD544 pKa = 3.44IDD546 pKa = 4.51GDD548 pKa = 4.16GQNEE552 pKa = 4.3LLSTDD557 pKa = 2.88NDD559 pKa = 3.22QRR561 pKa = 11.84VFLLSLDD568 pKa = 3.51NGQYY572 pKa = 6.43QQKK575 pKa = 8.31WAYY578 pKa = 9.36PYY580 pKa = 10.93VLSQQEE586 pKa = 4.38TIQQVLPIGRR596 pKa = 11.84NQAGSKK602 pKa = 9.68PILVVTDD609 pKa = 3.57HH610 pKa = 6.77ALWRR614 pKa = 11.84IDD616 pKa = 5.49DD617 pKa = 4.4LAQPARR623 pKa = 11.84QIFNTDD629 pKa = 2.56NFLRR633 pKa = 11.84SALLADD639 pKa = 3.56IDD641 pKa = 4.21GDD643 pKa = 3.93GTEE646 pKa = 3.94EE647 pKa = 4.91LIYY650 pKa = 10.62HH651 pKa = 7.1AAADD655 pKa = 4.28AYY657 pKa = 10.63SATLAIVNVVALDD670 pKa = 4.08DD671 pKa = 4.53PSTEE675 pKa = 3.96LMSFTVDD682 pKa = 2.88EE683 pKa = 5.02FSTFDD688 pKa = 3.39VGNVDD693 pKa = 2.88TDD695 pKa = 3.81ANLEE699 pKa = 4.16LVLNTGSVFDD709 pKa = 5.02LVTAEE714 pKa = 4.82NEE716 pKa = 4.09WQLGTGFSTQYY727 pKa = 9.32VTTGDD732 pKa = 3.9LNGDD736 pKa = 4.14GIDD739 pKa = 4.32EE740 pKa = 5.0IISADD745 pKa = 3.18SWGAMYY751 pKa = 10.66VFSVTEE757 pKa = 3.98KK758 pKa = 9.28TQLDD762 pKa = 3.68SRR764 pKa = 11.84DD765 pKa = 3.77AEE767 pKa = 4.74DD768 pKa = 3.58ICDD771 pKa = 3.66LRR773 pKa = 11.84AFNLNQDD780 pKa = 3.93DD781 pKa = 3.87TDD783 pKa = 4.25EE784 pKa = 5.69IIISDD789 pKa = 4.26CQWGEE794 pKa = 4.0VQAFTLDD801 pKa = 3.65EE802 pKa = 4.32NSALAQLWSVDD813 pKa = 3.91LQEE816 pKa = 5.23HH817 pKa = 6.74GSTSLSAGDD826 pKa = 4.12IDD828 pKa = 4.26NDD830 pKa = 3.59GHH832 pKa = 8.37IEE834 pKa = 4.08VLWGSGVSSSGRR846 pKa = 11.84DD847 pKa = 3.2ILVTADD853 pKa = 3.55VVGTTATVKK862 pKa = 10.72PEE864 pKa = 4.0TSPVQLDD871 pKa = 3.58AFAAAGWATTGADD884 pKa = 3.58DD885 pKa = 3.87EE886 pKa = 4.66QGVFIVPTTDD896 pKa = 2.54SGYY899 pKa = 10.65SGLSIARR906 pKa = 11.84LNQNGTVNVNDD917 pKa = 4.18KK918 pKa = 10.78FSSFWQSGMFSAITDD933 pKa = 3.65TDD935 pKa = 3.27NDD937 pKa = 4.94GIDD940 pKa = 5.52DD941 pKa = 4.05ILLPTTGTYY950 pKa = 10.23DD951 pKa = 3.35YY952 pKa = 11.36GLGAFALSDD961 pKa = 4.18LSSLWTVYY969 pKa = 10.97GDD971 pKa = 3.43YY972 pKa = 9.49DD973 pKa = 4.13TNINQIKK980 pKa = 9.88LQDD983 pKa = 3.71INNDD987 pKa = 2.6GHH989 pKa = 6.21TDD991 pKa = 3.18VMFADD996 pKa = 4.34GDD998 pKa = 4.05VLTVIDD1004 pKa = 4.39TQTQEE1009 pKa = 3.61QLTSYY1014 pKa = 10.52RR1015 pKa = 11.84FSQSIADD1022 pKa = 4.11FDD1024 pKa = 3.95VADD1027 pKa = 3.78IDD1029 pKa = 4.24GVTTVLVTLRR1039 pKa = 11.84EE1040 pKa = 4.03QVHH1043 pKa = 6.16ILTLKK1048 pKa = 7.09EE1049 pKa = 3.89TRR1051 pKa = 11.84FTVVDD1056 pKa = 4.0SVSDD1060 pKa = 3.39ILCNRR1065 pKa = 11.84ILFYY1069 pKa = 10.83GQSNQRR1075 pKa = 11.84SVACLWTDD1083 pKa = 3.17YY1084 pKa = 10.81GASLRR1089 pKa = 11.84TMRR1092 pKa = 11.84IVDD1095 pKa = 3.59NQATEE1100 pKa = 4.39LEE1102 pKa = 4.68TFALEE1107 pKa = 4.13HH1108 pKa = 6.1NAVAIAVDD1116 pKa = 3.57PTDD1119 pKa = 3.53PQRR1122 pKa = 11.84FIIAANTEE1130 pKa = 4.27DD1131 pKa = 2.97GWYY1134 pKa = 9.88DD1135 pKa = 3.42ARR1137 pKa = 11.84SQLHH1141 pKa = 6.41SLTAQGKK1148 pKa = 7.73LVWSGPVLIGSANVASLQLRR1168 pKa = 11.84EE1169 pKa = 4.06QTSGKK1174 pKa = 10.6LEE1176 pKa = 3.91ILYY1179 pKa = 7.92GTSKK1183 pKa = 10.6GMYY1186 pKa = 8.4WIHH1189 pKa = 6.63

Molecular weight: 129.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A346NH93|A0A346NH93_9ALTE Probable chromosome-partitioning protein ParB OS=Salinimonas sediminis OX=2303538 GN=D0Y50_00070 PE=3 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNLKK11 pKa = 10.14RR12 pKa = 11.84KK13 pKa = 9.13RR14 pKa = 11.84SHH16 pKa = 6.17GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37NGRR28 pKa = 11.84KK29 pKa = 9.16VLAARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.29GRR39 pKa = 11.84ARR41 pKa = 11.84LSAA44 pKa = 3.91

Molecular weight: 5.07 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3700

0

3700

1236480

11

1702

334.2

36.97

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

9.838 ± 0.047

1.005 ± 0.015

5.599 ± 0.038

5.609 ± 0.041

4.018 ± 0.024

6.89 ± 0.038

2.41 ± 0.023

5.817 ± 0.03

4.379 ± 0.032

10.259 ± 0.055

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.526 ± 0.023

3.993 ± 0.023

4.206 ± 0.026

5.03 ± 0.034

4.984 ± 0.028

6.27 ± 0.033

5.732 ± 0.027

6.989 ± 0.033

1.287 ± 0.017

3.159 ± 0.022
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski