Cognatiyoonia sediminum

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Alphaproteobacteria; Rhodobacterales; Rhodobacteraceae; Cognatiyoonia

Average proteome isoelectric point is 5.75

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 3230 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A1M5QR44|A0A1M5QR44_9RHOB HemY protein OS=Cognatiyoonia sediminum OX=1508389 GN=SAMN05444003_2262 PE=4 SV=1
MM1 pKa = 7.98DD2 pKa = 4.69KK3 pKa = 10.63KK4 pKa = 10.62IAIISATALGALLLGSVAFILRR26 pKa = 11.84GSAYY30 pKa = 10.37ASACSASVVAGGAIGGPFTLVDD52 pKa = 3.69EE53 pKa = 5.01SGVEE57 pKa = 4.07VTDD60 pKa = 3.64QDD62 pKa = 4.82VIDD65 pKa = 4.98APSLIYY71 pKa = 10.29FGYY74 pKa = 8.28TFCPDD79 pKa = 4.22FCPLDD84 pKa = 3.67AQRR87 pKa = 11.84NAVTSDD93 pKa = 2.58ILADD97 pKa = 3.51QGLDD101 pKa = 3.34LNTVFITIDD110 pKa = 3.48PARR113 pKa = 11.84DD114 pKa = 3.56TPEE117 pKa = 3.66VLAEE121 pKa = 4.09YY122 pKa = 9.94TDD124 pKa = 3.83NFHH127 pKa = 7.39PDD129 pKa = 3.19MVGLTGSDD137 pKa = 3.58EE138 pKa = 4.34QIKK141 pKa = 10.27AAANEE146 pKa = 4.12YY147 pKa = 10.04KK148 pKa = 10.46VVYY151 pKa = 10.34SRR153 pKa = 11.84ADD155 pKa = 3.69DD156 pKa = 4.51DD157 pKa = 4.5PEE159 pKa = 5.19FYY161 pKa = 11.25LMNHH165 pKa = 5.57SVFSYY170 pKa = 10.06FVTPEE175 pKa = 3.93DD176 pKa = 3.76GFVDD180 pKa = 4.59FFKK183 pKa = 11.32NDD185 pKa = 3.61DD186 pKa = 3.68TPEE189 pKa = 3.94AVAEE193 pKa = 4.78RR194 pKa = 11.84IACHH198 pKa = 6.29IGG200 pKa = 3.0

Molecular weight: 21.46 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A1M5SVN0|A0A1M5SVN0_9RHOB L-glutamine-binding protein /L-glutamate-binding protein /L-aspartate-binding protein /L-asparagine-binding protein OS=Cognatiyoonia sediminum OX=1508389 GN=SAMN05444003_3147 PE=4 SV=1
MM1 pKa = 7.45KK2 pKa = 9.61RR3 pKa = 11.84TFQPSNRR10 pKa = 11.84VRR12 pKa = 11.84KK13 pKa = 8.99NRR15 pKa = 11.84HH16 pKa = 3.77GFRR19 pKa = 11.84ARR21 pKa = 11.84MATKK25 pKa = 10.37AGRR28 pKa = 11.84KK29 pKa = 8.54ILNARR34 pKa = 11.84RR35 pKa = 11.84AKK37 pKa = 10.35GRR39 pKa = 11.84AKK41 pKa = 10.69LSAA44 pKa = 3.92

Molecular weight: 5.09 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

3230

0

3230

985169

26

3813

305.0

33.27

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

11.09 ± 0.056

0.914 ± 0.012

6.401 ± 0.04

6.286 ± 0.042

4.011 ± 0.032

8.399 ± 0.034

1.976 ± 0.021

5.685 ± 0.033

3.716 ± 0.039

9.578 ± 0.047

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.826 ± 0.023

3.053 ± 0.022

4.727 ± 0.029

3.273 ± 0.023

5.778 ± 0.039

5.579 ± 0.032

5.646 ± 0.031

7.304 ± 0.035

1.398 ± 0.02

2.359 ± 0.02
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski