Corynebacterium otitidis ATCC 51513

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Actinobacteria; Actinomycetia; Corynebacteriales; Corynebacteriaceae; Corynebacterium; Corynebacterium otitidis

Average proteome isoelectric point is 5.93

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 1846 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|K0YTM6|K0YTM6_9CORY Uncharacterized protein (Fragment) OS=Corynebacterium otitidis ATCC 51513 OX=883169 GN=HMPREF9719_00211 PE=4 SV=1
MM1 pKa = 7.08VSAAVGAALLLAGWLGIDD19 pKa = 5.11LIDD22 pKa = 4.63GSTEE26 pKa = 3.87GEE28 pKa = 3.94PAAGQEE34 pKa = 4.03PGEE37 pKa = 4.15LPEE40 pKa = 5.91CEE42 pKa = 4.57LATLPEE48 pKa = 4.25EE49 pKa = 4.25ADD51 pKa = 3.7EE52 pKa = 4.45VVDD55 pKa = 6.16DD56 pKa = 4.8ILAGGPFAYY65 pKa = 9.71PEE67 pKa = 4.09NDD69 pKa = 3.09DD70 pKa = 3.81THH72 pKa = 6.55FGNYY76 pKa = 8.48EE77 pKa = 3.71GRR79 pKa = 11.84LPEE82 pKa = 5.33ADD84 pKa = 2.73GDD86 pKa = 4.14YY87 pKa = 10.8YY88 pKa = 11.32RR89 pKa = 11.84EE90 pKa = 4.23FTVEE94 pKa = 4.12TPGLDD99 pKa = 2.96HH100 pKa = 7.24RR101 pKa = 11.84GPRR104 pKa = 11.84RR105 pKa = 11.84IVTGGDD111 pKa = 3.19SRR113 pKa = 11.84DD114 pKa = 3.53PDD116 pKa = 2.99VWYY119 pKa = 8.44YY120 pKa = 11.04TDD122 pKa = 3.53DD123 pKa = 3.75HH124 pKa = 7.61YY125 pKa = 11.78EE126 pKa = 4.21SFCEE130 pKa = 5.36IPDD133 pKa = 3.57ADD135 pKa = 3.51

Molecular weight: 14.65 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|K0YPP0|K0YPP0_9CORY Uncharacterized protein (Fragment) OS=Corynebacterium otitidis ATCC 51513 OX=883169 GN=HMPREF9719_01606 PE=4 SV=1
MM1 pKa = 7.4GSVIKK6 pKa = 10.42KK7 pKa = 8.47RR8 pKa = 11.84RR9 pKa = 11.84KK10 pKa = 9.22RR11 pKa = 11.84MAKK14 pKa = 9.29KK15 pKa = 9.76KK16 pKa = 8.72HH17 pKa = 5.56RR18 pKa = 11.84KK19 pKa = 5.56MLRR22 pKa = 11.84RR23 pKa = 11.84TRR25 pKa = 11.84VQRR28 pKa = 11.84RR29 pKa = 11.84KK30 pKa = 10.11LGKK33 pKa = 9.87

Molecular weight: 4.15 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

1846

0

1846

610217

22

3030

330.6

35.41

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

13.315 ± 0.104

0.571 ± 0.012

6.231 ± 0.053

7.422 ± 0.071

2.962 ± 0.036

9.482 ± 0.055

1.833 ± 0.023

4.126 ± 0.038

2.627 ± 0.049

9.833 ± 0.073

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.631 ± 0.022

2.208 ± 0.032

5.594 ± 0.042

2.614 ± 0.034

7.451 ± 0.057

5.299 ± 0.032

5.26 ± 0.038

8.313 ± 0.057

1.269 ± 0.023

1.959 ± 0.027
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski