Granulosicoccus antarcticus IMCC3135

Taxonomy: cellular organisms; Bacteria; Proteobacteria; Gammaproteobacteria; Chromatiales; Granulosicoccaceae; Granulosicoccus; Granulosicoccus antarcticus

Average proteome isoelectric point is 5.95

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6680 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A2Z2NMS6|A0A2Z2NMS6_9GAMM Fe2OG dioxygenase domain-containing protein OS=Granulosicoccus antarcticus IMCC3135 OX=1192854 GN=IMCC3135_12175 PE=3 SV=1
MM1 pKa = 7.49WRR3 pKa = 11.84RR4 pKa = 11.84ASVFAVHH11 pKa = 6.76IAILGSLTACSEE23 pKa = 4.58SPFSGSEE30 pKa = 3.92TADD33 pKa = 3.25SDD35 pKa = 4.22TQTSSATPSSPTSQTNDD52 pKa = 2.94GSDD55 pKa = 3.79SLSQPQSVVVAQANPTVVEE74 pKa = 4.32IPDD77 pKa = 3.4VAAATPEE84 pKa = 3.83PTPIVVNPFTPVPQPTSEE102 pKa = 4.04PDD104 pKa = 3.14EE105 pKa = 4.4EE106 pKa = 4.64QEE108 pKa = 5.03SEE110 pKa = 4.3PDD112 pKa = 3.52DD113 pKa = 4.87SPDD116 pKa = 3.32EE117 pKa = 4.19VVANSDD123 pKa = 3.41SDD125 pKa = 3.81TDD127 pKa = 3.93GNTGSDD133 pKa = 3.12AGADD137 pKa = 3.76SEE139 pKa = 5.71AEE141 pKa = 4.51LDD143 pKa = 3.84TADD146 pKa = 4.24NSPEE150 pKa = 4.02STEE153 pKa = 4.07TPEE156 pKa = 3.92TGVADD161 pKa = 4.09SQSSPTDD168 pKa = 3.26NGDD171 pKa = 3.12TDD173 pKa = 4.16LAEE176 pKa = 4.31TDD178 pKa = 3.8VDD180 pKa = 4.46DD181 pKa = 5.02SDD183 pKa = 4.71SAATDD188 pKa = 3.84TEE190 pKa = 4.33ASTDD194 pKa = 4.08DD195 pKa = 3.62NTQDD199 pKa = 5.16AEE201 pKa = 4.52TTDD204 pKa = 4.15DD205 pKa = 4.08SAPEE209 pKa = 3.67TDD211 pKa = 3.49VAEE214 pKa = 4.46EE215 pKa = 4.34SSDD218 pKa = 3.47DD219 pKa = 3.72TAEE222 pKa = 3.9QDD224 pKa = 3.61STDD227 pKa = 4.17SIVAIDD233 pKa = 4.1PADD236 pKa = 3.69SGEE239 pKa = 4.31TEE241 pKa = 3.9QSKK244 pKa = 11.4AEE246 pKa = 3.99AEE248 pKa = 4.48NNFSSHH254 pKa = 4.34TTAGFIGKK262 pKa = 9.03IVDD265 pKa = 4.47DD266 pKa = 4.9SIQVSWEE273 pKa = 4.0VEE275 pKa = 4.14PGALGYY281 pKa = 10.22NVYY284 pKa = 10.98LEE286 pKa = 4.39GKK288 pKa = 9.58YY289 pKa = 7.97VTTVWEE295 pKa = 3.95NSYY298 pKa = 11.27VEE300 pKa = 4.07TDD302 pKa = 4.47LYY304 pKa = 10.37DD305 pKa = 3.18QNYY308 pKa = 8.93YY309 pKa = 10.88YY310 pKa = 10.18EE311 pKa = 4.28IQSFDD316 pKa = 3.74EE317 pKa = 4.18TKK319 pKa = 10.49KK320 pKa = 10.28IYY322 pKa = 9.42WYY324 pKa = 10.32NATGLTVKK332 pKa = 9.9VRR334 pKa = 11.84SAGRR338 pKa = 11.84VDD340 pKa = 3.61SSRR343 pKa = 11.84ATAKK347 pKa = 10.72ADD349 pKa = 4.12LLNDD353 pKa = 3.47YY354 pKa = 10.51QLIFSDD360 pKa = 4.22EE361 pKa = 4.41FTGSTLDD368 pKa = 3.38TSKK371 pKa = 10.87WNTALLWGDD380 pKa = 3.38QIIINGEE387 pKa = 3.79VQFYY391 pKa = 11.35VDD393 pKa = 4.61INNKK397 pKa = 9.28PDD399 pKa = 3.37FGFNPFTFDD408 pKa = 5.02GEE410 pKa = 4.42HH411 pKa = 5.86LTINSIKK418 pKa = 9.65TPSEE422 pKa = 3.74LSEE425 pKa = 4.12KK426 pKa = 10.97AKK428 pKa = 10.1GQPYY432 pKa = 10.16LSGVITSYY440 pKa = 11.34DD441 pKa = 3.5ALQFIYY447 pKa = 10.05GYY449 pKa = 10.99AEE451 pKa = 3.7TRR453 pKa = 11.84AKK455 pKa = 9.38VTFGRR460 pKa = 11.84GYY462 pKa = 10.02WPAFWLLNAYY472 pKa = 9.19YY473 pKa = 10.14GQGGDD478 pKa = 4.33DD479 pKa = 3.81PEE481 pKa = 5.43IDD483 pKa = 2.86IMEE486 pKa = 5.4FIGHH490 pKa = 6.37DD491 pKa = 3.33QDD493 pKa = 4.46VVYY496 pKa = 8.4HH497 pKa = 6.4TYY499 pKa = 10.3HH500 pKa = 6.79YY501 pKa = 10.63YY502 pKa = 10.68DD503 pKa = 3.49EE504 pKa = 4.86NGEE507 pKa = 4.06LRR509 pKa = 11.84STKK512 pKa = 9.89SQPTPGVDD520 pKa = 3.39YY521 pKa = 11.56SEE523 pKa = 5.45DD524 pKa = 3.1FHH526 pKa = 7.47TFGVEE531 pKa = 3.92WKK533 pKa = 9.11PGTIIYY539 pKa = 10.0YY540 pKa = 8.9VDD542 pKa = 4.32GIEE545 pKa = 3.92VHH547 pKa = 6.52RR548 pKa = 11.84VVDD551 pKa = 4.12PKK553 pKa = 11.14VSQQTMYY560 pKa = 11.01VIANTAMGGWWAGDD574 pKa = 3.65PDD576 pKa = 4.3EE577 pKa = 4.63TTPFPGEE584 pKa = 3.69FMIDD588 pKa = 3.63YY589 pKa = 10.03IRR591 pKa = 11.84VYY593 pKa = 10.74QRR595 pKa = 11.84TTPYY599 pKa = 11.32DD600 pKa = 3.5DD601 pKa = 4.7VLFNDD606 pKa = 5.03DD607 pKa = 3.18MTGIPFADD615 pKa = 5.44EE616 pKa = 4.46IPGSAIPNHH625 pKa = 6.77RR626 pKa = 11.84PTPAQWPAGYY636 pKa = 8.83PHH638 pKa = 6.97AQQ640 pKa = 3.11

Molecular weight: 69.97 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A2Z2NWN7|A0A2Z2NWN7_9GAMM 8-oxo-dGTP diphosphatase OS=Granulosicoccus antarcticus IMCC3135 OX=1192854 GN=mutT PE=3 SV=1
MM1 pKa = 7.53INSIPPQGLVLLSIVAIQVGAAVAIHH27 pKa = 6.57LFPVLGASGTVAVRR41 pKa = 11.84IIFSAILLGLAARR54 pKa = 11.84TGLRR58 pKa = 11.84TLVQTFRR65 pKa = 11.84LHH67 pKa = 5.41WKK69 pKa = 9.4LLVVFGLSIAAMNLFFYY86 pKa = 10.42QALARR91 pKa = 11.84IPLGAAVAFEE101 pKa = 4.69FIGPLGVAALASRR114 pKa = 11.84RR115 pKa = 11.84LTQFAWIALAALGIVLLSPLSGADD139 pKa = 3.77LDD141 pKa = 4.8PIGILFALMAGTGWACFIIFAGRR164 pKa = 11.84VGKK167 pKa = 9.91LIPGNDD173 pKa = 3.4GLAIGMAVAALAMIPFALPVAGILVTNPLILLASIGVALLSTTIPFTFEE222 pKa = 3.19FTALKK227 pKa = 10.11RR228 pKa = 11.84LPARR232 pKa = 11.84TYY234 pKa = 9.98GVLVSLEE241 pKa = 4.23PGVAALVGALLLGEE255 pKa = 4.82RR256 pKa = 11.84IGLQGMIAITCVIIAAIGITLSDD279 pKa = 3.64ARR281 pKa = 11.84TPPP284 pKa = 3.23

Molecular weight: 29.25 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6680

0

6680

2309472

29

8704

345.7

37.83

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

10.024 ± 0.032

1.035 ± 0.013

6.086 ± 0.077

5.862 ± 0.028

3.704 ± 0.02

7.601 ± 0.031

2.137 ± 0.018

5.678 ± 0.025

3.376 ± 0.033

10.503 ± 0.045

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.528 ± 0.022

3.47 ± 0.031

4.434 ± 0.024

4.013 ± 0.026

5.665 ± 0.044

7.147 ± 0.038

5.656 ± 0.054

7.271 ± 0.027

1.304 ± 0.014

2.507 ± 0.017
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski