Canis familiaris papillomavirus 3

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cossaviricota; Papovaviricetes; Zurhausenvirales; Papillomaviridae; Firstpapillomavirinae; Chipapillomavirus; Chipapillomavirus 1

Average proteome isoelectric point is 6.33

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 6 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|Q0QLX6|Q0QLX6_9PAPI Protein E6 OS=Canis familiaris papillomavirus 3 OX=360397 GN=E6 PE=3 SV=1
MM1 pKa = 7.39IGKK4 pKa = 9.27DD5 pKa = 2.95ATLRR9 pKa = 11.84DD10 pKa = 3.81IVLEE14 pKa = 4.05EE15 pKa = 4.16QPTPVDD21 pKa = 3.94NLWCDD26 pKa = 3.44EE27 pKa = 4.35EE28 pKa = 5.06LAQSDD33 pKa = 4.05DD34 pKa = 4.24DD35 pKa = 4.35EE36 pKa = 6.01EE37 pKa = 4.3EE38 pKa = 4.25ALTNQNLRR46 pKa = 11.84PFRR49 pKa = 11.84IQTSCGTCEE58 pKa = 3.73RR59 pKa = 11.84GIKK62 pKa = 9.84IVVLCTQEE70 pKa = 5.49GIHH73 pKa = 6.51CLEE76 pKa = 4.29TLLCRR81 pKa = 11.84NTSLCCPTCAASYY94 pKa = 10.56RR95 pKa = 11.84FDD97 pKa = 3.44HH98 pKa = 6.85GGG100 pKa = 2.97

Molecular weight: 11.16 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|Q0QLX6|Q0QLX6_9PAPI Protein E6 OS=Canis familiaris papillomavirus 3 OX=360397 GN=E6 PE=3 SV=1
MM1 pKa = 7.26EE2 pKa = 5.56RR3 pKa = 11.84PWSLASLCVRR13 pKa = 11.84SGVSLCAISIPCVFCGNLLSFEE35 pKa = 4.72DD36 pKa = 3.64RR37 pKa = 11.84VSFDD41 pKa = 3.47FKK43 pKa = 11.07VLQVSWKK50 pKa = 9.96NGLPHH55 pKa = 7.31ACCTSCARR63 pKa = 11.84SICSRR68 pKa = 11.84EE69 pKa = 3.71VSQYY73 pKa = 8.1TSEE76 pKa = 4.37EE77 pKa = 3.15ISYY80 pKa = 9.75RR81 pKa = 11.84QFVQRR86 pKa = 11.84VGQGFYY92 pKa = 9.83WIPVRR97 pKa = 11.84CTCCLGLVTTTQKK110 pKa = 10.19IQALYY115 pKa = 10.26RR116 pKa = 11.84RR117 pKa = 11.84QKK119 pKa = 8.86FKK121 pKa = 10.86KK122 pKa = 9.85VRR124 pKa = 11.84GRR126 pKa = 11.84WRR128 pKa = 11.84TLCTYY133 pKa = 10.29CAEE136 pKa = 4.75SDD138 pKa = 3.78NDD140 pKa = 3.26WEE142 pKa = 3.82RR143 pKa = 11.84RR144 pKa = 11.84YY145 pKa = 10.27FEE147 pKa = 3.99RR148 pKa = 11.84HH149 pKa = 4.88RR150 pKa = 11.84SS151 pKa = 3.41

Molecular weight: 17.67 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

6

0

6

2367

100

628

394.5

43.9

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

6.337 ± 0.609

2.07 ± 0.821

5.746 ± 0.649

6.126 ± 0.473

3.845 ± 0.567

7.52 ± 0.903

2.324 ± 0.254

3.929 ± 0.512

4.098 ± 0.701

8.407 ± 0.384

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.521 ± 0.346

3.971 ± 0.247

6.464 ± 1.075

4.183 ± 0.629

7.224 ± 0.427

8.323 ± 0.522

6.591 ± 0.315

6.971 ± 0.991

1.521 ± 0.329

2.831 ± 0.28
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski