Corchorus golden mosaic virus [India:Bahraich:2008]

Taxonomy: Viruses; Monodnaviria; Shotokuvirae; Cressdnaviricota; Repensiviricetes; Geplafuvirales; Geminiviridae; Begomovirus; Corchorus golden mosaic virus

Average proteome isoelectric point is 8.29

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 7 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|B7UA01|B7UA01_9GEMI AC4 OS=Corchorus golden mosaic virus [India:Bahraich:2008] OX=582838 GN=AC4 PE=3 SV=1
MM1 pKa = 7.54SGRR4 pKa = 11.84FRR6 pKa = 11.84KK7 pKa = 9.97QGVSFFLTWPKK18 pKa = 10.76CPVTKK23 pKa = 10.45EE24 pKa = 4.03SALDD28 pKa = 3.59QILALALPTNIIYY41 pKa = 10.18IRR43 pKa = 11.84VCEE46 pKa = 4.36EE47 pKa = 3.47KK48 pKa = 10.64HH49 pKa = 6.14QDD51 pKa = 3.54GSPHH55 pKa = 5.97LHH57 pKa = 6.9ALVQFQKK64 pKa = 11.17KK65 pKa = 9.05FICTNCRR72 pKa = 11.84LFDD75 pKa = 4.13LSHH78 pKa = 6.67PQNSRR83 pKa = 11.84QFHH86 pKa = 5.18CHH88 pKa = 5.9IEE90 pKa = 4.25TARR93 pKa = 11.84SSSDD97 pKa = 2.64AKK99 pKa = 11.09SYY101 pKa = 10.6IEE103 pKa = 4.15KK104 pKa = 10.8DD105 pKa = 3.55GVFCEE110 pKa = 4.16WGTFQVDD117 pKa = 3.02GRR119 pKa = 11.84SARR122 pKa = 11.84GGQQTINEE130 pKa = 4.51AYY132 pKa = 10.29AKK134 pKa = 10.32ALNSGSKK141 pKa = 10.68DD142 pKa = 3.25EE143 pKa = 4.61ALTVIKK149 pKa = 10.39EE150 pKa = 4.24LVPKK154 pKa = 10.49DD155 pKa = 3.87YY156 pKa = 11.34VCQFHH161 pKa = 6.83NLNANLEE168 pKa = 4.51RR169 pKa = 11.84IFAPPVHH176 pKa = 6.89VFEE179 pKa = 5.27PPFPLSSFNNVPAVINQWVNDD200 pKa = 4.13NIMDD204 pKa = 4.59AAARR208 pKa = 11.84PFRR211 pKa = 11.84PISIVIEE218 pKa = 4.68GPSRR222 pKa = 11.84TGKK225 pKa = 7.64TLWARR230 pKa = 11.84SLGRR234 pKa = 11.84HH235 pKa = 5.8NYY237 pKa = 10.07LCGHH241 pKa = 7.41LDD243 pKa = 4.18LSPKK247 pKa = 10.02VYY249 pKa = 10.89SNEE252 pKa = 3.02AWYY255 pKa = 10.82NVIDD259 pKa = 5.29DD260 pKa = 4.41VDD262 pKa = 3.64PHH264 pKa = 6.13YY265 pKa = 10.52LKK267 pKa = 10.88HH268 pKa = 5.92MKK270 pKa = 10.16EE271 pKa = 4.06FMGAQRR277 pKa = 11.84DD278 pKa = 3.71WQSNCKK284 pKa = 9.1YY285 pKa = 10.44GKK287 pKa = 9.33PIQINGGIPTIFLCNPGPTSSYY309 pKa = 10.54KK310 pKa = 10.57EE311 pKa = 3.87YY312 pKa = 10.98FEE314 pKa = 4.61EE315 pKa = 4.44EE316 pKa = 4.27KK317 pKa = 11.17NSAIYY322 pKa = 10.38DD323 pKa = 3.71WAKK326 pKa = 10.67KK327 pKa = 9.77NAIFVTIEE335 pKa = 3.71EE336 pKa = 4.81PFFDD340 pKa = 4.17TADD343 pKa = 3.54QASTSTLEE351 pKa = 4.17EE352 pKa = 4.69SNSSS356 pKa = 3.27

Molecular weight: 40.38 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|B7U9Z8|B7U9Z8_9GEMI Replication enhancer OS=Corchorus golden mosaic virus [India:Bahraich:2008] OX=582838 GN=AC3 PE=3 SV=1
MM1 pKa = 7.44MKK3 pKa = 10.24RR4 pKa = 11.84EE5 pKa = 4.26APWRR9 pKa = 11.84TNAGTSKK16 pKa = 10.09VRR18 pKa = 11.84RR19 pKa = 11.84SLNFSPRR26 pKa = 11.84SGLGPKK32 pKa = 10.13ASAWVNRR39 pKa = 11.84PMYY42 pKa = 9.63RR43 pKa = 11.84KK44 pKa = 8.55PRR46 pKa = 11.84IYY48 pKa = 9.41RR49 pKa = 11.84TYY51 pKa = 10.75RR52 pKa = 11.84SPDD55 pKa = 3.09VSKK58 pKa = 11.11GCEE61 pKa = 4.44GPCKK65 pKa = 10.23VQSFEE70 pKa = 3.82QRR72 pKa = 11.84HH73 pKa = 6.26DD74 pKa = 3.16ISHH77 pKa = 6.13VGKK80 pKa = 10.55VMCISDD86 pKa = 3.56VTRR89 pKa = 11.84GNGITHH95 pKa = 6.78RR96 pKa = 11.84VGKK99 pKa = 9.62RR100 pKa = 11.84FCIKK104 pKa = 10.12SVYY107 pKa = 10.1ILGKK111 pKa = 10.11VWMDD115 pKa = 4.51DD116 pKa = 3.58NIKK119 pKa = 10.64LKK121 pKa = 10.74NHH123 pKa = 5.99TNSVMFWLIRR133 pKa = 11.84DD134 pKa = 3.59RR135 pKa = 11.84RR136 pKa = 11.84PYY138 pKa = 8.14GTPMDD143 pKa = 4.6FGQVFNMYY151 pKa = 10.66DD152 pKa = 3.86NEE154 pKa = 4.36PSTATIKK161 pKa = 10.89NDD163 pKa = 3.0LRR165 pKa = 11.84DD166 pKa = 3.73RR167 pKa = 11.84YY168 pKa = 9.95QVLHH172 pKa = 6.65RR173 pKa = 11.84FASKK177 pKa = 9.07VTGGQYY183 pKa = 11.09ASNEE187 pKa = 3.76QSLVRR192 pKa = 11.84RR193 pKa = 11.84FWKK196 pKa = 10.44VNNHH200 pKa = 4.48VVYY203 pKa = 10.66NHH205 pKa = 5.91QEE207 pKa = 3.39AAKK210 pKa = 10.14YY211 pKa = 10.5DD212 pKa = 3.75NHH214 pKa = 6.5TEE216 pKa = 4.02NALLLYY222 pKa = 7.29MACTHH227 pKa = 7.07ASNPVYY233 pKa = 9.86ATLKK237 pKa = 9.47IRR239 pKa = 11.84IYY241 pKa = 10.6FYY243 pKa = 11.36DD244 pKa = 4.19SILNN248 pKa = 3.75

Molecular weight: 28.88 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

7

0

7

1552

100

356

221.7

25.32

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

5.477 ± 0.775

2.191 ± 0.186

4.961 ± 0.242

4.124 ± 0.724

4.317 ± 0.476

4.961 ± 0.714

3.544 ± 0.421

5.928 ± 0.593

5.67 ± 0.393

7.281 ± 0.601

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

2.191 ± 0.456

5.863 ± 0.578

5.284 ± 0.527

3.737 ± 0.334

7.539 ± 0.88

9.923 ± 0.92

5.412 ± 0.548

6.186 ± 0.713

1.418 ± 0.281

3.995 ± 0.703
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski