Candidatus Phytoplasma phoenicium

Taxonomy: cellular organisms; Bacteria; Terrabacteria group; Tenericutes; Mollicutes; Acholeplasmatales; Acholeplasmataceae; Candidatus Phytoplasma; 16SrIX (Pigeon pea witches'-broom group)

Average proteome isoelectric point is 8.13

Get precalculated fractions of proteins

Acidic
pI < 6.8
6.8-7.4
pI > 7.4
Basic
    
All



Virtual 2D-PAGE plot for 327 proteins (isoelectric point calculated using IPC2_protein)

Get csv file with sequences according to given criteria:
        -     Method 

     -  kDa    
                                                                                      

* You can choose from 21 different methods for calculating isoelectric point

Summary statistics related to proteome-wise predictions


    
Protein with the lowest isoelectric point:
>tr|A0A0L0MJC7|A0A0L0MJC7_9MOLU Signal recognition particle receptor protein FtsY OS=Candidatus Phytoplasma phoenicium OX=198422 GN=ftsY PE=4 SV=1
MM1 pKa = 7.43KK2 pKa = 10.32KK3 pKa = 9.56MYY5 pKa = 9.83IHH7 pKa = 6.65RR8 pKa = 11.84TTYY11 pKa = 10.76YY12 pKa = 10.37EE13 pKa = 3.99NQNKK17 pKa = 7.46ITYY20 pKa = 10.07DD21 pKa = 3.69NEE23 pKa = 4.02FNDD26 pKa = 3.11QGIIIKK32 pKa = 8.67QIWYY36 pKa = 9.35LPNSQDD42 pKa = 2.22IDD44 pKa = 4.33FIVEE48 pKa = 3.84YY49 pKa = 10.82DD50 pKa = 3.63PLTGEE55 pKa = 4.48EE56 pKa = 4.01IDD58 pKa = 3.73MEE60 pKa = 4.45KK61 pKa = 10.77LKK63 pKa = 9.58EE64 pKa = 4.29TYY66 pKa = 10.33LVTVTNIDD74 pKa = 3.43MGPSHH79 pKa = 6.88EE80 pKa = 4.21NN81 pKa = 2.98

Molecular weight: 9.74 kDa
Isoelectric point according different methods:





Protein with the highest isoelectric point:
>tr|A0A0L0MK62|A0A0L0MK62_9MOLU Uncharacterized protein (Fragment) OS=Candidatus Phytoplasma phoenicium OX=198422 GN=AlmWB_01650 PE=4 SV=1
MM1 pKa = 7.3ARR3 pKa = 11.84IAGVDD8 pKa = 2.99IPGNKK13 pKa = 8.43RR14 pKa = 11.84VVISLTYY21 pKa = 9.98IYY23 pKa = 10.64GIGLKK28 pKa = 8.47TSRR31 pKa = 11.84KK32 pKa = 9.17LLCDD36 pKa = 3.17LHH38 pKa = 8.15IDD40 pKa = 3.54EE41 pKa = 5.63NIRR44 pKa = 11.84VNKK47 pKa = 10.23LSEE50 pKa = 4.17EE51 pKa = 4.19QLSHH55 pKa = 6.98LRR57 pKa = 11.84NEE59 pKa = 4.32CTKK62 pKa = 10.91LSVEE66 pKa = 3.91GSLRR70 pKa = 11.84RR71 pKa = 11.84NITLNIKK78 pKa = 9.9RR79 pKa = 11.84LMEE82 pKa = 4.44IGCDD86 pKa = 2.97RR87 pKa = 11.84GIHH90 pKa = 5.63HH91 pKa = 7.25RR92 pKa = 11.84RR93 pKa = 11.84GLPVRR98 pKa = 11.84GQKK101 pKa = 8.12TRR103 pKa = 11.84NNAKK107 pKa = 7.94TAKK110 pKa = 9.63KK111 pKa = 9.72RR112 pKa = 11.84RR113 pKa = 11.84KK114 pKa = 9.26KK115 pKa = 10.61

Molecular weight: 13.18 kDa
Isoelectric point according different methods:





Peptides (in silico digests for buttom-up proteomics)

Below you can find in silico digests of the whole proteome with Trypsin, Chymotrypsin, Trypsin+LysC, LysN, ArgC proteases suitable for different mass spec machines.

Try
ESI
ChTry
ESI
ArgC
ESI
LysN
ESI
TryLysC
ESI

Try
MALDI
ChTry
MALDI
ArgC
MALDI
LysN
MALDI
TryLysC
MALDI

Try
LTQ
ChTry
LTQ
ArgC
LTQ
LysN
LTQ
TryLysC
LTQ

Try
MSlow
ChTry
MSlow
ArgC
MSlow
LysN
MSlow
TryLysC
MSlow

Try
MShigh
ChTry
MShigh
ArgC
MShigh
LysN
MShigh
TryLysC
MShigh

General Statistics

Number of major isoforms

Number of additional isoforms

Number of all proteins

Number of amino acids

Min. Seq. Length

Max. Seq. Length

Avg. Seq. Length

Avg. Mol. Weight

327

0

327

94800

34

1364

289.9

33.55

Amino acid frequency

Ala

Cys

Asp

Glu

Phe

Gly

His

Ile

Lys

Leu

4.121 ± 0.094

0.976 ± 0.041

4.261 ± 0.078

5.961 ± 0.133

5.896 ± 0.142

4.458 ± 0.121

2.223 ± 0.054

10.628 ± 0.132

10.481 ± 0.139

10.852 ± 0.124

Met

Asn

Gln

Pro

Arg

Ser

Thr

Val

Trp

Tyr

1.999 ± 0.044

6.862 ± 0.11

2.991 ± 0.063

5.386 ± 0.133

2.917 ± 0.074

5.557 ± 0.095

5.052 ± 0.078

4.822 ± 0.086

0.617 ± 0.036

3.943 ± 0.081
Note: For amino acid frequency statistics the error has been estimated with the bootstraping (x100) at the protein level

Most of the basic statistics you can see at this page can be downloaded from this CSV file

For dipeptide frequency statistics click here
See this proteome in: uniprot_link
Proteome-pI is available under Creative Commons Attribution-NoDerivs license, for more details see here

Reference: Kozlowski LP. Proteome-pI 2.0: Proteome Isoelectric Point Database Update. Nucleic Acids Res. 2021, doi: 10.1093/nar/gkab944 Contact: Lukasz P. Kozlowski